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Record W4387165459 · doi:10.1021/acs.cgd.3c00600

Atomic Transfer in Halogen-Bonded Complexes Mediated by Polarizing Environments: Mimicking Intra- and Intermolecular Effects in a Series of Cocrystals of N-Bromosaccharin with Pyridines

2023· article· en· W4387165459 on OpenAlexfundno aff
Emmanuel Aubert, Irène Nicolas, Olivier Jeannin, Marc Fourmigué, Enrique Espinosa

Bibliographic record

VenueCrystal Growth & Design · 2023
Typearticle
Languageen
FieldChemistry
TopicCrystallography and molecular interactions
Canadian institutionsnot available
FundersInstitute of Circulatory and Respiratory HealthAgence Nationale de la Recherche
KeywordsChemistryPolarizabilityAdductHalogen bondHalogenIntermolecular forceMoleculeCrystallographyElectric fieldDipoleAtom (system on chip)Computational chemistryHydrogen bondOrganic chemistry

Abstract

fetched live from OpenAlex

The good halogen bond donor N-bromosaccharin (NBrSac) has been cocrystallized with four para -substituted pyridines (Py X ) as good halogen bond acceptors of different strengths (PyCN, PyCF 3, PyCO 2 Me, and PyMe). Their crystal structures have been determined and permitted to observe the formation of adducts with a significantly weakened N Sac ···Br bonding interaction with respect to the NBrSac donor and the formation of a strong Br···N Py interaction. The topological properties at the N Sac ···Br···N Py bond critical points (BCPs) of the adducts frozen at experimental geometries indicate the increasing strength of the studied acceptors along the series PyCN < PyCF 3 < PyCO 2 Me < PyMe, correlating with the structural distances and the deeper negative molecular electrostatic potential values in the individual molecules. The polarizability calculated in individual molecules clearly points out the atomic dipole moments of the N Sac, Br, and N Py atoms, increasing in magnitude within the adducts and demonstrating their sensitivity to external electric fields mimicking molecular environments. In order to explore the effect of polarizing environments on the N Sac ···Br···N Py halogen bonding motif, an external electric field has been applied (−40 × 10 –4 < ε < 100 × 10 –4 a.u.) to adducts extracted from experimental geometries with all atoms frozen except Br, which has been optimized as a function of ε. It has been shown that an effective electric field ranging from 1.28 to 2.96 GV m –1 is necessary to recover the experimental position of the Br-atom in the adducts (from that calculated in gas-phase optimization), providing an evaluation of the effect of the crystalline environment. At any investigated geometry (i.e., within the full range of applied fields), the adducts exhibit a significant covalence degree at both donor and acceptor sides (measured by 1 < | V |/ G < 2), in addition to a nonnegligible delocalization index (DI(N Sac |N Py )) in the range of 0.085–0.099. These features indicate that the adducts should be considered as a unique molecular entity rather than two while pointing to an assembly with a small but nonnegligible contribution of a three-center four-electrons interaction. The formal border of the halogen atom transfer between donor and acceptor moieties is established by the topological magnitudes of ρ and | V |/ G at both BCPs, as well as that of DI, which all balance almost simultaneously in donor and acceptor regions. The position of the halogen atom within the adduct is straightforwardly driven by the external polarization induced by ε, permitting control of the significant variation of the dipole moment of the adducts.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.206
Teacher spread0.197 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2023
Admission routes1
Has abstractyes

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