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Record W4387267860 · doi:10.1101/2023.10.01.23296035

Geometry of navigation identifies genetic-risk and clinical Alzheimer’s disease

2023· preprint· en· W4387267860 on OpenAlexfundno aff
Uzu Lim, Rodrigo Leal Cervantes, Gillian Coughlan, Renaud Lambiotte, Hugo J. Spiers, Michael Hornberger, Heather A. Harrington

Bibliographic record

VenuemedRxiv · 2023
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEpigenetics and DNA Methylation
Canadian institutionsnot available
FundersNational Health and Medical Research CouncilAlzheimer SocietyEngineering and Physical Sciences Research CouncilAlzheimer's AssociationMedical Research CouncilKorea Foundation for Advanced Studies
KeywordsDementiaComputer scienceTask (project management)DiseaseToolboxArtificial intelligenceSpace (punctuation)Machine learningMedicinePathologyEngineering

Abstract

fetched live from OpenAlex

ABSTRACT Recent research evidence demonstrates that the inability to orient oneself and navigate space is an early indicator of Alzheimer’s Disease. The video game Sea Hero Quest (SHQ) was designed to assess the players’ navigation ability, and several research works analysed the SHQ data using simple metrics such as length and time of navigation paths. Expanding these analyses, we propose new performance metrics that capture the geometry of paths, and analyse datasets of more than 60,000 navigators. The metrics identify players who failed the navigation task, the dementia patients, and carriers of the at-risk allele of the Apolipoprotein-E [APOE]. Furthermore the metrics detect weak navigation ability when only a fraction of navigation paths are used, with superior performance to baseline methods. Our findings demonstrate that the proposed performance metrics pave the way to a comprehensive pre-clinical screening toolbox for Alzheimer’s Disease. TEASER We propose geometric methods to capture decline in navigation ability from dementia.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.046
GPT teacher head0.347
Teacher spread0.301 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2023
Admission routes1
Has abstractyes

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