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Physiological and Digital Phenotyping of Drought Tolerance in Brassica Crops

2023· preprint· en· W4387523766 on OpenAlexaffabout
Lakma Rathuge, Christina Eynck, Hema Duddu, Isobel A. P. Parkin, Steven J. Shirtliffe

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldEnvironmental Science
TopicRemote Sensing in Agriculture
Canadian institutionsAgriculture and Agri-Food CanadaUniversity of Saskatchewan
Fundersnot available
KeywordsGermplasmCropBrassica carinataDrought stressDrought toleranceBiologyAgricultureAgronomyAgricultural engineeringBrassicaEcologyEngineering

Abstract

fetched live from OpenAlex

Climate change poses a significant threat to agricultural systems, with drought becoming increasingly prevalent in the Canadian prairies. This study addresses the urgent need to enhance crop resilience, focusing on Brassica carinata, a promising industrial feedstock crop used for the production of biofuels. Our research aims to comprehensively evaluate drought adaptive capacity in B. carinata through a combination of physiological and digital phenotyping methods. Under controlled conditions, we utilized a high-throughput phenotyping platform, the Plantarray system, to screen B. carinata germplasm. This system facilitated precise measurements of physiological traits, soil conditions, and atmospheric parameters, enabling the assessment of drought response. Concurrently, we conducted a field phenotyping experiment with 47 B. carinata Nested Association Mapping (NAM) founder lines and two B. napus checks, under irrigated and non-irrigated conditions. Aerial imagery obtained through Unmanned Aerial Vehicles (UAVs), complemented by phenological observations and manually recorded phenotypic data, was systematically gathered. Digital phenotypes extracted from aerial images are analyzed to identify a digital phenotype(s) for drought tolerance. Our study also explores the correlation between indoor physiological data and field performance of B. carinata lines, in an effort to identify parameters that can serve as reliable predictors of seed yield under drought stress. Overall, we believe this research provides valuable insights for enhancing crop resilience to drought.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.234
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes2
Has abstractyes

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