MétaCan
Menu
Back to cohort
Record W4387831820 · doi:10.1109/access.2023.3326342

PCSS: Skull Stripping With Posture Correction From 3D Brain MRI for Diverse Imaging Environment

2023· article· en· W4387831820 on OpenAlex
Kei Nishimaki, Kumpei Ikuta, Shingo Fujiyama, Kenichi Oishi, Hitoshi Iyatomi

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueIEEE Access · 2023
Typearticle
Languageen
FieldEngineering
TopicMedical Imaging and Analysis
Canadian institutionsnot available
FundersJapan Society for the Promotion of ScienceCanadian Institutes of Health ResearchNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierEisaiNorthern California Institute for Research and EducationF. Hoffmann-La RocheUniversity of Southern CaliforniaBiogenEli Lilly and CompanyBristol-Myers SquibbBioClinicaU.S. Department of DefenseMeso Scale DiagnosticsAlzheimer's Disease Neuroimaging InitiativeNovartis Pharmaceuticals CorporationPfizerAlzheimer's Association
KeywordsSkullNeuroimagingStripping (fiber)Computer scienceNeuroscienceMedicineAnatomyMaterials sciencePsychology

Abstract

fetched live from OpenAlex

A subject’s head position in magnetic resonance imaging (MRI) scanners can vary significantly with the imaging environment and disease status. This variation is known to influence the accuracy of skull stripping (SS), a method to extract the brain region from the whole head image, which is an essential initial step to attain high performance in various neuroimaging applications. However, existing SS methods have failed to accommodate this wide range of variation. To achieve accurate, consistent, and fast SS, we introduce a novel two-stage methodology that we call posture correction skull stripping (PCSS): the first involves adjusting the subject’s head angle and position, and the second involves the actual SS to generate the brain mask. PCSS also incorporates various machine learning techniques, such as a weighted loss function, adversarial training from generative adversarial networks, and ensemble methods. Thorough evaluations conducted on five publicly accessible datasets show that the PCSS method outperforms current state-of-the-art techniques in SS performance, achieving an average increase of 1.38 points on the Dice score and demonstrating the contributions of each PCSS component technique.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.655
Threshold uncertainty score0.457

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.247
Teacher spread0.234 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it