MétaCan
Menu
Back to cohort
Record W4387892835 · doi:10.1128/mra.00651-23

Draft genome sequence of <i>Pseudomonas</i> sp. ER28, a cyclohexane pentanoic acid degrader isolated from oil sands process-affected water from Alberta, Canada

2023· article· en· W4387892835 on OpenAlexafffundabout
Kira L. Goff, Jeff Gauthier, Lisa M. Gieg, Irena Kukavica‐Ibrulj, Esther Ramos-Padrón, Shawn Lewenza, Roger C. Lévesque

Bibliographic record

VenueMicrobiology Resource Announcements · 2023
Typearticle
Languageen
FieldChemistry
TopicPetroleum Processing and Analysis
Canadian institutionsUniversité LavalAthabasca UniversityUniversity of Calgary
FundersGenome AlbertaCanadian Natural Resources LimitedGenome British ColumbiaGovernment of CanadaNatural Sciences and Engineering Research Council of CanadaGovernment of AlbertaCanadian Institutes of Health ResearchGenome Canada
KeywordsOil sandsCyclohexaneSequence (biology)Whole genome sequencingPseudomonasEnvironmental scienceGenomeBiologyChemistryGeographyOrganic chemistryGeneArchaeologyGeneticsBacteria

Abstract

fetched live from OpenAlex

ABSTRACT We report the draft genome sequence of Pseudomonas sp. ER28, capable of utilizing the model naphthenic acid, cyclohexane pentanoic acid, as its sole carbon source. It was recovered from oil sands process-affected water containing cyclic and acyclic naphthenic acids. The genome size is 5.7 Mbp, and the G + C content is 60%.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.563
Threshold uncertainty score0.869

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0020.005
Science and technology studies0.0010.000
Scholarly communication0.0020.000
Open science0.0010.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0050.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.218
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2023
Admission routes3
Has abstractyes

Explore more

Same venueMicrobiology Resource AnnouncementsSame topicPetroleum Processing and AnalysisFrench-language works237,207