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Record W4387978699 · doi:10.1002/tax.13057

(426–433) Miscellaneous proposals to amend the <i>Shenzhen Code</i>

2023· article· en· W4387978699 on OpenAlexaboutno aff
Nicholas J. Turland, John H. Wiersema

Bibliographic record

VenueTaxon · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsnot available
Fundersnot available
KeywordsCode (set theory)BiologyProgramming languageComputer science

Abstract

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Ever since the publication of the Shenzhen Code (Turland & al. in Regnum Veg. 159. 2018), ideas for proposals to amend it have been accumulating and gestating in the Rapporteurs’ files, affectionately dubbed the “Madrid Crate”. Some of these proposals have been published separately by other authors, while others have been abandoned as unworkable. The remainder is published here. The first proposal is almost editorial. Articles 3 and 4 list the principal and secondary ranks in both English and Latin, e.g. “form (forma)” in Art. 4.1. Abbreviations for those ranks are recommended in Rec. 5A.1, which cites the unabbreviated ranks in English, except for “forma”, which is in Latin. For consistency, this should be replaced by the English “form”. Editorially, in Art. 24 Ex. 1 change “subforma” to “subform” and in Art. 36 Ex. 13 change “second forma” to “second form”. A recently noted article by Stafleu (in Taxon 6: 150. 1957) indicates that some conserved fossil names were omitted from both the 1952 Stockholm Code (Lanjouw & al. in Regnum Veg. 3. 1952) and the 1961 Paris Code (Lanjouw & al. in Regnum Veg. 8. 1956), first appearing only in the 1966 Montreal Code (Lanjouw & al. in Regnum Veg. 23: 324. 1961), despite having been approved at the 1950 Stockholm Congress (see Proceedings of the Seventh International Botanical Congress: 548. 1953, https://archive.org/details/in.ernet.dli.2015.351670/page/n565; also in Regnum Veg. 1: 548. 1953). The effective date of conservation of these, which dates before the origin of the General Committee, is not accounted for in Art. 14 Note 4, but would be the same as those of the Special Committee for Fungi, thereby requiring the following modification to the Note: “(c) Conservation of names in for the 1952 Stockholm Code include: (1) those of the Special Committee for Phanerogamae and Pteridophyta, which became effective on 1 June 1940 under the authority of the VI IBC held in Amsterdam in 1935 (see Bull. Misc. Inform. Kew 1940: 81–134); (2) those of the Special Committee for Fungi, which became effective on 20 July 1950 at the VII IBC in Stockholm (see Regnum Veg. 1: 549–550. 1953); (3) those of the Special Committee on Palaeobotanical Nomenclature, which also became effective on 20 July 1950 at the VII IBC in Stockholm (see Regnum Veg. 1: 548. 1953), but were omitted from both the Stockholm Code and the 1961 Paris Code.” Concerning the effective publication of electronic material, a particular electronic publication could have: (1) an evidently preliminary version, which is not effectively published (Art. 30.2); (2) a version whose content is considered by the publisher to be final, which is effectively published (also Art. 30.2); and (3) a version as in (2) that is later altered, in which case the alterations are not themselves effectively published (Art. 30.4). Under case (3), the original version, whose content is considered final, should remain effectively published and not be retroactively treated as a preliminary version. In addition, alteration of an electronic publication could logically extend to retraction of that publication, which was already addressed by a proposed new Note in Art. 30 (Prop. 159, Prado & al. in Taxon 71: 711. 2022): “Note n. Electronic material that has been effectively published remains effectively published even if retracted by its publisher.” So that Art. 30.4 is more explicit with regard to these issues, the following amendments are proposed. “30.4. The content of a particular electronic publication must may not be altered or retracted after it is effectively published. Any such alterations are not themselves effectively published and have no effect on the original publication. Corrections or revisions must be issued separately to be effectively published.” There is a problem relating to the incongruity of dates appearing in Art. 33.1 and some other Articles. The second sentence of Art. 33.1 states: “A name published on or after 1 January 1973 for which the various conditions for valid publication are not simultaneously fulfilled is not validly published unless full and direct reference (Art. 41.5) is given to the place(s) where these requirements were previously fulfilled (but see Art. 41.7)” (emphasis added). This provision first entered the Seattle Code (Stafleu & al. in Regnum Veg. 82. 1972) in then Art. 45 in essentially identical form. The conditions for valid publication that might require referencing for such a name would include provision of a Latin or English description or diagnosis or a reference to one (Art. 38, 39, 43.1, 44.1), designation or indication of a type (Art. 40), reference to a basionym or replaced synonym (Art. 41) and, for fossil-taxa or algae, provision of or reference to an illustration (Art. 43.2, 44.2). The implication of Art. 33.1 could be that a “full and direct reference” to the place where these requirements were fulfilled is not required before 1973, yet one of these requirements, established after 1972, requires that a full and direct reference be provided after an earlier date. For example, Art. 38.13, which first appeared in the Berlin Code (Greuter & al. in Regnum Veg. 118. 1988) in then Art. 32.3, states in part: “For names published on or after 1 January 1953 it [reference to a previously and effectively published description or diagnosis] must, however, be full and direct as specified in Art. 41.5.” One could read Art. 33.1 to imply that a name of a new taxon published between 1953 and 1973 that at publication lacks a description or diagnosis and a full and direct reference to a previously published description or diagnosis would nonetheless be validly published without any, or with only indirect, reference to such, in seeming conflict with Art. 38.13. Indeed, there are many such names that have been considered validly published between 1953 and 1973 owing to Art. 33.1. For example, Quézel & Contandriopoulos (in Taxon 16: 239–240. 1967) designated types for seventeen species and infraspecies names they had described in three previous publications in 1964 and 1965 but failed to indicate the types, as required after 1958. While each of the three publications was cited with its full pagination, this was not in conjunction with the names and so lacked the page references required by Art. 41.5 and thus Art. 38.13. These names would be validly published under Art. 33.1, but not under Art. 38.13. Because these names were originally published with descriptions, not with references to them, Art. 38.13 need not apply to these and other similar cases if some adjustment is made to Art. 33.1. “33.1. The date of a name is that of its valid publication. When the various conditions for valid publication are not simultaneously fulfilled, the date is that on which the last is fulfilled. However, the name must always be explicitly accepted in the place of its valid publication. A name published on or after 1 January 1973 for which When the various conditions for valid publication are not simultaneously fulfilled, a name is not validly published unless full and direct reference (Art. 41.5) is given to the place(s) where these requirements were previously fulfilled; this reference must be full and direct (Art. 41.5) on or after 1 January 1973 (but see also Art. 41.7).” The next proposal concerns Art. 36.3, which reads as follows: “36.3. When, on or after 1 January 1953, two or more different names based on the same type are accepted simultaneously for the same taxon by the same author and accepted as alternatives by that author in the same publication (so-called alternative names), none of them, if new, is validly published.” There are three issues. Superfluous wording. The words “and accepted as alternatives by that author” are superfluous. If the names are “accepted simultaneously for the same taxon by the same author” they must be “accepted as alternatives by that author”. Multiple authors. It is also possible that two or more different names based on the same type are accepted simultaneously for the same taxon by different sets of authors in the same publication. If the sets of authors are mutually exclusive, the names are not alternative names and may be validly published. But it seems desirable that if even one author is common to the sets of authors, the names should be alternative names and those that are new should not be validly published. This could be achieved by adding the words in italics: “When, […], two or more different names based on the same type are accepted simultaneously for the same taxon by any one and the same author in the same publication […].” Suprageneric names. The last sentence of Art. 36.3 states that the rule “does not apply in those cases where the same combination is simultaneously used at different ranks, either for infraspecific taxa or for subdivisions of a genus”. However, there is no parallel exception for suprageneric names formed from the same generic name, and therefore based on the same type, simultaneously used at different ranks. The following amendments are therefore proposed. “36.3. When, on or after 1 January 1953, two or more different names based on the same type are accepted simultaneously for the same taxon by any one and the same author and accepted as alternatives by that author in the same publication (so-called alternative names), none of them, if new, is validly published. This rule does not apply in those cases where the same combination is simultaneously used at different ranks, either for infraspecific taxa or for subdivisions of a genus (see Rec. 22A.1, 22A.2, and 26A.1–3), nor where suprageneric names formed from the same generic name are simultaneously used at different ranks (see Rec. 19A.1 and 19A.2), nor to names provided for in Art. F.8.1.” In Art. 54.1 clause (b), the wording of subclause (2) is strange: “becomes a homonym of an algal, fungal, or plant name when the taxon to which it applies is first treated as an alga, fungus, or plant”. Homonyms are homonyms regardless of their taxonomic application, even when two Codes are involved, and becoming a homonym when first applied to an alga, fungus or plant seems to imply a nomenclatural act. The wording also fails to specify that it is a later homonym that is illegitimate (see Art. 53.1). “54.1. […] (b) A name applied to an organism covered by this Code and validly published under it (Art. 32–45) but originally published for a taxon other than an alga, fungus, or plant, i.e. under another Code, is illegitimate if it (1) is unavailable for use under the provisions of the other Code1, usually because of homonymy, or (2) becomes is a later homonym of an algal, fungal, or plant name when the taxon to which it applies is first treated as an alga, fungus, or plant (see also Art. 45.1).” At the Shenzhen Congress of 2017, there were two Recorders (Lindon & al. in PhytoKeys 150: 5. 2020), and there will again be two at the Madrid Congress of 2024, but Div. III Prov. 4.5 and 4.10 imply that there is only one Recorder. While more than one Recorder is not explicitly forbidden, it would be better if this were explicitly allowed. “4.5. The Bureau of Nomenclature of the International Botanical Congress comprises the following officers: President of the Nomenclature Section; up to five Vice-presidents; the Rapporteur-général; the Vice-rapporteur; the Recorder one or more Recorders. The Bureau of Nomenclature defines the sequence and timing of debates; appoints Tellers to collect and count voting cards in the event of a card vote (see Prov. 5.10); and advises the President on procedural matters.” “4.10. The Recorder is Recorders are appointed by the Organizing Committee of the International Botanical Congress in consultation with the Rapporteur-général. The Recorder is Recorders are responsible for all local facilities needed by the Nomenclature Section, such as the venue and its equipment, and in particular for the detailed recording of the proceedings of the Section and for facilitating the voting.” According to Div. III Prov. 7.5, “The Committee on Institutional Votes comprises six members, each to represent a different continent, plus the Rapporteur-général, who serves as its chair.” However, after the Shenzhen Congress, the Committee took on another member as its “Advisor for Fungi” (see Ulloa Ulloa & al. in Taxon 72: 701–703. 2023) because none of the seven members elected in Shenzhen was a mycologist. The possibility to take on additional members for such purposes should be explicitly allowed. “7.5. The Committee on Institutional Votes comprises six members, each to represent a different continent, plus the Rapporteur-général, who serves as its chair, plus any additional members that the Committee considers are required.” We thank Werner Greuter (Palermo/Berlin), John McNeill (Edinburgh/Toronto) and Anna M. Monro (Canberra) for their comments and suggestions, which led to some of the above proposals.

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How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.710
Threshold uncertainty score0.713

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.241
Teacher spread0.225 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2023
Admission routes1
Has abstractyes

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