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Record W4387997240 · doi:10.1093/infdis/jiad466

Reply to McShane

2023· letter· en· W4387997240 on OpenAlexaff
Philip C. Hill, Frank Cobelens, Leonardo Martínez, Alberto L. García‐Basteiro, Marcel A. Behr, Molebogeng X. Rangaka, Gavin Churchyard, Tom Evans, Willem A. Hanekom, Richard G. White

Bibliographic record

VenueThe Journal of Infectious Diseases · 2023
Typeletter
Languageen
FieldMedicine
TopicHerpesvirus Infections and Treatments
Canadian institutionsInstitute of Infection and ImmunityMcGill UniversityMcGill University Health Centre
FundersNational Institute of Allergy and Infectious DiseasesUniversity College LondonLondon School of Hygiene and Tropical MedicineNational Institutes of HealthVanderbilt University
KeywordsPsychology

Abstract

fetched live from OpenAlex

To the Editor—We are pleased to see that our recent Perspective entitled, “An aspiration to radically shorten phase 3 tuberculosis vaccine trials” [1] was accompanied by a commentary by experienced tuberculosis vaccine researcher Professor Helen McShane [2]. We hope that these pieces will stimulate debate about this important topic. As part of this, we would like to address some of the statements made by Professor McShane. First, it is argued that key aspects of our suggested approach would be unlikely to be acceptable in today's ethical and regulatory environment. Our view is that the opinion of regulators should not be presupposed and engagement of them in these discussions is crucial, so more creative and efficient trial designs might be fully considered in vaccine development. Second, at the heart of the issues raised are the safety data from the trial and case ascertainment. With respect to the safety data set, it does not make epidemiological sense that the sample size required for efficacy must be the same, or even similar, as that for safety. Our short-duration vaccine trial design proposes to enroll a larger number of participants to measure efficacy. However, for a disease with relatively low incidence of cases over follow-up, such as tuberculosis, whether all participants need to be subject to all safety evaluations for regulatory purposes is especially important to consider. We propose that safety follow-up for regulatory purposes should have its own independent sample size requirements and that this may well result in a smaller number of participants needing stringent safety assessment compared to efficacy evaluation. We note that such an approach would not be new. For example, only 58% of participants in a phase 3 trial of a herpes zoster subunit vaccine underwent stringent safety follow-up [3]. With respect to case ascertainment, it is important not to conflate stringency of end point ascertainment with completeness. Stringency of end point ascertainment is about specificity, while completeness is about sensitivity. Our key point is that in a vaccine trial specificity should be maximized to prevent bias in the estimation of vaccine efficacy, but that sensitivity can be less than 100% because it will only reduce statistical power without affecting the validity of the efficacy estimate. The decision relates to efficiency, not vaccine efficacy estimation. As such, the effort needed to reach 100% sensitivity should be balanced against the effort needed to enroll the number of trial participants to make up for the loss in power when sensitivity to detect a case is lower than that. Finally, we want to thank Professor McShane and the journal for stimulating discussions on strategies to come up with a more effective tuberculosis vaccine in the shortest amount of time. We hope that fellow researchers, regulators, and the other relevant stakeholders engage to find creative alternatives to the traditionally slow and extremely expensive pathway for tuberculosis vaccine development. Financial support. No financial support was received for this work.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.042
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Commentary · Consensus signal: Commentary
Teacher disagreement score0.114
Threshold uncertainty score0.055

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.042
Meta-epidemiology (narrow)0.0010.002
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0010.001
Science and technology studies0.0110.005
Scholarly communication0.0090.005
Open science0.0040.005
Research integrity0.1140.083
Insufficient payload (model declined to judge)0.0160.011

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.294
Teacher spread0.275 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreCommentary

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2023
Admission routes1
Has abstractno

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