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Record W4388654465 · doi:10.1038/s42254-023-00655-3

How to verify the precision of density-functional-theory implementations via reproducible and universal workflows

2023· review· en· W4388654465 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueNature Reviews Physics · 2023
Typereview
Languageen
FieldMaterials Science
TopicMachine Learning in Materials Science
Canadian institutionsMcMaster University
FundersInstitute for Materials Research, Tohoku UniversityNational Center of Competence in Research Materials’ Revolution: Computational Design and Discovery of Novel MaterialsEuropean Regional Development FundDepartment of Materials Science and Metallurgy, University of CambridgeGauss Centre for SupercomputingUniversität PaderbornRWTH Aachen UniversityEngineering and Physical Sciences Research CouncilCommissariat à l'Énergie Atomique et aux Énergies AlternativesDanmarks Tekniske UniversitetHelmholtz-Zentrum Dresden-RossendorfÉcole Polytechnique Fédérale de LausanneUniversiteit GentUniversität WienAustrian Science FundMcMaster UniversityPartnership for Advanced Computing in Europe AISBLEuropean CommissionDivision of Materials ResearchAcademia SinicaAgencia Estatal de InvestigaciónSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungPaul Scherrer InstitutFonds Wetenschappelijk OnderzoekVlaams Supercomputer CentrumVlaamse regeringFonds De La Recherche Scientifique - FNRSCentral Michigan UniversityForschungszentrum JülichArcelorMittalVillum FondenNational Science Foundation
KeywordsImplementationComputer scienceWorkflowDensity functional theoryProgramming languageTheoretical computer scienceDatabaseChemistryComputational chemistry

Abstract

fetched live from OpenAlex

Density-functional theory methods and codes adopting periodic boundary conditions are extensively used in condensed matter physics and materials science research. In 2016, their precision (how well properties computed with different codes agree among each other) was systematically assessed on elemental crystals: a first crucial step to evaluate the reliability of such computations. In this Expert Recommendation, we discuss recommendations for verification studies aiming at further testing precision and transferability of density-functional-theory computational approaches and codes. We illustrate such recommendations using a greatly expanded protocol covering the whole periodic table from Z = 1 to 96 and characterizing 10 prototypical cubic compounds for each element: four unaries and six oxides, spanning a wide range of coordination numbers and oxidation states. The primary outcome is a reference dataset of 960 equations of state cross-checked between two all-electron codes, then used to verify and improve nine pseudopotential-based approaches. Finally, we discuss the extent to which the current results for total energies can be reused for different goals. Verification efforts of density-functional theory (DFT) calculations are of crucial importance to evaluate the reliability of simulation results. In this Expert Recommendation, we suggest metrics for DFT verification, illustrating them with an all-electron reference dataset of 960 equations of state covering the whole periodic table (hydrogen to curium) and discuss the importance of improving pseudopotential codes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.986
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0050.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.058
GPT teacher head0.365
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it