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Record W4389005263 · doi:10.1101/2023.11.25.568594

Formation of recurring transient Ca <sup>2+</sup> -based intercellular communities during <i>Drosophila</i> hematopoiesis

2023· preprint· en· W4389005263 on OpenAlexafffund
Saar Ben David, Kevin Y.L. Ho, Guy Tanentzapf, Assaf Zaritsky

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldNeuroscience
TopicNeurobiology and Insect Physiology Research
Canadian institutionsUniversity of British Columbia
FundersCouncil for Higher EducationCanadian Institutes of Health ResearchRosetrees Trust
KeywordsMulticellular organismBiologyCell biologyHaematopoiesisCell signalingCellNeuroscienceStem cellSignal transductionGenetics

Abstract

fetched live from OpenAlex

Abstract Tissue development occurs through a complex interplay between many individual cells. Yet, the fundamental question of how collective tissue behavior emerges from heterogeneous and noisy information processing and transfer at the single-cell level remains unknown. Here, we reveal that tissue scale signaling regulation can arise from local gap-junction mediated cell-cell signaling through the spatiotemporal establishment of an intermediate-scale of transient multicellular communication communities over the course of tissue development. We demonstrated this intermediate scale of emergent signaling using Ca 2+ signaling in the intact, ex vivo cultured, live developing Drosophila hematopoietic organ, the Lymph Gland (LG). Recurrent activation of these transient signaling communities defined self-organized signaling “hotspots” that receive and transmit information to facilitate repetitive interactions with non-hotspot neighbors, transfer information across cells, and regulate the developmental progression of hotspots. Overall, this work bridges the scales between single-cell and emergent group behavior providing key mechanistic insight into how cells establish tissue-scale communication networks. Significance statement Cells coordinate their internal state and behavior by exchanging information with other cells in their vicinity. These local interactions are integrated across space and time to enable synchronized function at the tissue scale. Using live microscopy imaging of the Drosophila Lymph Gland, and by applying computational analyses, we identified and characterized a new mode of cellular communication through self-organized recurring coordinated short-term activation at the intermediate scale of 3-8 cells, which we call “hotspots”. We reveal that hotspots form over the course of tissue development, and are dependent on specific proteins, called gap-junctions, that enable communication between adjacent cells. Hotspots repeatedly transmit and retrieve information to and from their non-hotspot neighbors to spread information throughout the tissue to regulate and coordinate tissue function.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.039
GPT teacher head0.249
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes2
Has abstractyes

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