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Cardiorespiratory Fitness as a Predictor of Intestinal Microbial Diversity and Distinct Metagenomic Functions

2016· article· en· W4389007529 on OpenAlexaffabout
Mehrbod Estaki, Jason Pither, Peter Baumeister, Jonathan P. Little, SK Gill, Sanjoy Ghosh, Ahmadi-Vand Zahra, Katelyn R. Marsden, Deanna L. Gibson

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGut microbiota and health
Canadian institutionsOkanagan University CollegeUniversity of British Columbia, Okanagan CampusUniversity of British Columbia
Fundersnot available
KeywordsCardiorespiratory fitnessGut floraBiologyMetagenomicsFecesDysbiosisIrritable bowel syndromeContext (archaeology)BacteroidesAlpha diversitySpecies richnessPhysiologyInternal medicineEcologyMedicineGeneticsImmunologyBacteriaGene

Abstract

fetched live from OpenAlex

Background/Objective An imbalance between harmful and beneficial bacteria in the gut, termed dysbiosis, has been associated with a variety of illnesses. In specific, reduced community diversity has been implicated in various conditions such as inflammatory bowel disease, colorectal cancer, and irritable bowel syndrome amongst others. The role of physical fitness in the context of gut microbial community in humans is currently not known. A recent study of elite athletes suggested a positive association between fitness and microbial diversity in humans, however due to extreme dietary differences amongst the groups, disentangling the respective influences of fitness versus diet was not possible. Hence, we analyzed the gut microbiota of healthy subjects with varying cardiorespiratory fitness (CRF) levels with similar diets in order to isolate the relationship between fitness and microbial composition. Methods 22 males and 19 healthy females of similar age, BMI, and diets participated in this study. The subjects’ aerobic capacities were determined using a standard peak oxygen uptake (VO2peak) test, considered the gold standard of CRF. High‐throughput sequencing of the 16S rRNA of fecal microbiota were carried using the Illumina platform. Fecal short‐chain fatty acids (SCFA) were analysed using gas chromatography. Results The primary findings from this study showed that VO2peak was positively correlated with gut species richness (P=0.01, B‐coefficient=5.35) and can predict over 20% of the observed variability, while keeping all other factors constant, including diet. Further, protein intake but not VO2peak was significantly associated with changes in beta‐diversity, correlating strongly with Bacteroides genus. VO2peak was a significant factor in explaining variability of the microbiomes predicted metagenomic functions, aligning positively with genes related to bacterial chemotaxis and motility, and negatively with lipopolysaccharide biosynthesis. Of all SCFA analysed, VO2peak was positively correlated with only butyrate, known for its role in promoting gut health. Conclusions Results from this study show that CRF is correlated with increased microbial diversity in healthy humans and that the associated changes are anchored around a set of functional cores rather than specific taxa. The microbial profiles of those with high CRF levels favor the production of the beneficial SCFA, butyrate. As increased microbiota diversity and butyrate production is associated with overall host health, our findings warrant further research in the use of exercise prescription as an adjuvant therapy in combating dysbiosis‐associated diseases. Support or Funding Information This project was funded by the Natural Sciences & Engineering Research Council (NSERC) of Canada

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.466
Threshold uncertainty score0.370

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.229
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations14
Published2016
Admission routes2
Has abstractyes

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