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Identification and Characterization of a Novel Actin‐associated Protein Recruited to Structures at the Plasma Membrane

2016· article· en· W4389007545 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.
fundA Canadian funder is recorded on the work.

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrobial Metabolism and Applications
Canadian institutionsSimon Fraser University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsCell biologyListeria monocytogenesActinBiologyMotilityCytoplasmInternalizationCellCytoskeletonActin cytoskeletonCell membraneCytosolBacteriaBiochemistryGenetics

Abstract

fetched live from OpenAlex

Listeria monocytogenes is a bacterial pathogen that manipulates the host actin cytoskeleton during various parts of its infectious cycle. This bacterium invades host cells using actin‐dependent internalization mechanisms at the cell membrane and once in the cytosol, it generates an actin‐rich “comet tail” that propels the microbe within the host cytoplasm. To spread from cell‐to‐cell, L. monocytogenes uses very similar comet tail‐like structures to form listeriopods which protrude the host cell membrane during the cell‐to‐cell spreading event. Using a mass spectrometry screen designed to identify actin‐associated proteins that interact at the plasma membrane, we identified a ubiquitin‐conjugating protein (Ubc). To determine the functional role of this protein in cell membrane‐associated actin regulation, we hypothesized that Ubc would play a crucial role in Listeria monocytogenes infections as well as mammalian cell motility in general as actin‐membrane associations are also crucial for whole cell motility. To test this hypothesis, we initially immunolocalized Ubc in Listeria ‐infected Caco2 cells. Ubc localized to the bacterium‐actin interface exclusively when the bacteria were along the cell membrane. To characterize the function of Ubc at these structures, we utilized both a Ubc functional inhibitor on Caco2 cells as well as mouse embryonic fibroblasts that had decreased expression of the Ubc protein. Using both strategies, we observed a decrease in 1) bacterial internalization and 2) the formation of Listeria ‐induced actin structures, compared to infections with wildtype host cells. To determine if Ubc may play a role in whole cell motility, we conducted a wound healing assay on Ubc‐inhibited PtK2 cells and found that wound closure was impeded in Ubc‐inhibited cells after 24 hours as compared to controls. Our data indicates that Ubc is a novel regulator for general cell membrane‐associated actin dynamics and is a crucial factor for efficient bacterial infections. Support or Funding Information This study was funded through NSERC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.010
Threshold uncertainty score0.137

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.243
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it