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Identification and Characterization of a Novel Actin‐associated Protein Recruited to Structures at the Plasma Membrane

2016· article· en· W4389007545 on OpenAlexafffund
Michael Dominic Chua, Julian A. Guttman

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrobial Metabolism and Applications
Canadian institutionsSimon Fraser University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsCell biologyListeria monocytogenesActinBiologyMotilityCytoplasmInternalizationCellCytoskeletonActin cytoskeletonCell membraneCytosolBacteriaBiochemistryGenetics

Abstract

fetched live from OpenAlex

Listeria monocytogenes is a bacterial pathogen that manipulates the host actin cytoskeleton during various parts of its infectious cycle. This bacterium invades host cells using actin‐dependent internalization mechanisms at the cell membrane and once in the cytosol, it generates an actin‐rich “comet tail” that propels the microbe within the host cytoplasm. To spread from cell‐to‐cell, L. monocytogenes uses very similar comet tail‐like structures to form listeriopods which protrude the host cell membrane during the cell‐to‐cell spreading event. Using a mass spectrometry screen designed to identify actin‐associated proteins that interact at the plasma membrane, we identified a ubiquitin‐conjugating protein (Ubc). To determine the functional role of this protein in cell membrane‐associated actin regulation, we hypothesized that Ubc would play a crucial role in Listeria monocytogenes infections as well as mammalian cell motility in general as actin‐membrane associations are also crucial for whole cell motility. To test this hypothesis, we initially immunolocalized Ubc in Listeria ‐infected Caco2 cells. Ubc localized to the bacterium‐actin interface exclusively when the bacteria were along the cell membrane. To characterize the function of Ubc at these structures, we utilized both a Ubc functional inhibitor on Caco2 cells as well as mouse embryonic fibroblasts that had decreased expression of the Ubc protein. Using both strategies, we observed a decrease in 1) bacterial internalization and 2) the formation of Listeria ‐induced actin structures, compared to infections with wildtype host cells. To determine if Ubc may play a role in whole cell motility, we conducted a wound healing assay on Ubc‐inhibited PtK2 cells and found that wound closure was impeded in Ubc‐inhibited cells after 24 hours as compared to controls. Our data indicates that Ubc is a novel regulator for general cell membrane‐associated actin dynamics and is a crucial factor for efficient bacterial infections. Support or Funding Information This study was funded through NSERC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.243
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes2
Has abstractyes

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