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Novel Methodology for Muscle Volumization: 3D Laser Surface Scanning Meets CT

2017· article· en· W4389022786 on OpenAlexaffabout
Greg Skerratt, Nik Knowles, Louis M. Ferreira

Bibliographic record

VenueThe FASEB Journal · 2017
Typearticle
Languageen
FieldEngineering
TopicAnatomy and Medical Technology
Canadian institutionsWestern University
Fundersnot available
KeywordsFiducial markerSegmentationComputer visionComputer scienceArtificial intelligencePolygon meshLaser scanningSoftwareDICOMImage registrationMedical imagingBiomedical engineeringComputer graphics (images)MedicineLaserImage (mathematics)Physics

Abstract

fetched live from OpenAlex

Segmentation is the term for identification of intrinsic structures from volumetric scans like computed tomography (CT) or magnetic resonance (MR). Materials offering high image contrast can be automatically segmented; however, segmentation of soft tissues is much more difficult due to tissue homogeneity and the resulting similarity in image greyscale at muscle boundaries. The need exists for complete musculoskeletal models wherein the musculature and bony skeleton can interact virtually using medical imaging software for use in finite element analysis – a computerized method for assessing how an object will react to physical forces. Additionally, future benefits of such models could have positive impacts on anatomical teaching, pre‐operative planning, and improve musculoskeletal computer modeling. We propose a methodology utilizing 3D laser surface scanning for semi‐automatic segmentation and registration of shoulder musculature to prescanned CT images. The 3D surface geometry and texture of a dissected shoulder specimen was undertaken with laser scanning (Artec Space Spider). Scanning took place before and after each muscle was manually dissected. Eleven geometrical surface models containing texture were collected (). Each model was exported as a stereolithographic (stl) mesh file containing only geometrical information. Meshes were imported into medical imaging software (Materialise 3‐Matic) where each mesh was registered to the initial CT using the bones as common registration fiducials. Next, each mesh was co‐registered to the pre‐scanned CT images. Each mesh was filled to create a volume that could be visualized both three dimensionally and on the CT images. A Boolean subtraction was used to subtract one 3D volume from another. Boolean subtractions were performed opposite the order of dissection so that deeper layers of meshes were subtracted from a more superficial layer, leaving one single muscle volume. The result is a 3D musculoskeletal model as depicted in . In order to validate the scanned muscle volume for accuracy, the mean of a three‐trial water displacement protocol was compared to our computer segmented muscle volumes. Of the 13 muscles measured, computer segmented error ranged from −10% to 18.2% (). Good agreement between muscle volumes were achieved between water displacement and surface laser computer segmented methods (). Future directions include manually segmenting musculature from the original CT images in order to compare with our current findings. Overall, the laser scanning approach and mesh workflow appears a valid methodology that may prove to be more expeditious than the current manual segmentation approaches. Support or Funding Information Department of Anatomy & Cell Biology, Schulich School of Medicine & Dentistry, Western University, London, ON, Canada 1 Roth | McFarlane Hand and Upper Limb Centre (HULC), St. Joseph's Health Care, London, ON, Canada 2 Muscle Computer Segmented Muscle Volume (mm3) Water Displacement Muscle Volume (mm3) Water Displacement Three Trial Standard Deviation % Error Trapezius 44621 44397 1010 0.5 Deltoid 294141 294769 2084 −0.2 Pectoralis Major 10904 9913 638 10.0 Pectoralis Minor 3230 2732 254 18.2 Triceps 51066 53510 2190 −4.6 Biceps 13399 13148 819 1.9 Coracobrachialis 27056 27656 1191 −2.2 Latissimus Dorsi 62328 69274 2138 −10.0 Teres Major 90518 82502 3102 9.7 Teres Minor 16584 16805 238 −1.3 Infraspinatus 104910 97372 1126 7.7 Subscapularis 161146 169024 1382 −4.7 Supraspinatus 50744 50819 1389 −0.1

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.060
GPT teacher head0.302
Teacher spread0.243 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2017
Admission routes2
Has abstractyes

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