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Comparison of cardiogenic potential of induced Pluripotent Stem Cells (iPSCs) generated from murine various tissues: the role of epigenetic memory in reprogramming

2017· article· en· W4389022813 on OpenAlexaff
Xiao Qi, Jiapeng Wang, Taylor Kantor, Wei Huang, Wenfeng Cai, Jialiang Liang, Christian Paul, Darren H. Freed, Yigang Wang

Bibliographic record

VenueThe FASEB Journal · 2017
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPluripotent Stem Cells Research
Canadian institutionsUniversity of Alberta
FundersNational Institutes of Health
KeywordsInduced pluripotent stem cellReprogrammingStem cellBiologyProgenitor cellSomatic cellRegenerative medicineCell typeStem-cell therapyCell biologyCell therapyMesenchymal stem cellMyocyteCancer researchMedicineCellEmbryonic stem cellGenetics

Abstract

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Introduction Coronary artery disease (CAD), i.e. myocardial infarction and ischemic cardiomyopathy, is the global leading cause of death. Ischemia leads to loss of functional cardiomyocytes, which contributes to a variety of types of heart failure. Although conventional treatments including pharmacological therapy and coronary revascularization procedures exist, novel therapeutic approaches are still needed. The prospect of stem‐cell‐based therapies might have considerable therapeutic potential. Induced pluripotent stem cells (iPSCs) can be generated from a variety of somatic cells as a potential resource of replacement cells, making them ideal cellular models to provide a renewable source of cardiomyocytes for cell‐based therapy. However, an ideal cell type with superior cardiomyocyte (CM) potential has yet to be identified. Masseter muscle cells (MMC) characterized as Isl‐1 + cells, a genetic marker associated with stem and progenitor states, also contribute to various cardiovascular lineages and have similar embryological origins. We postulate the regenerative potential of masseter muscle cell lineages may yield valuable developmental and clinical insights in the identification of a cell source capable of enhanced cardiomyocyte differentiation and may be used in cell‐based therapy. This study aims to study the role of epigenetic memory in the cardiogenic potential of different lineages of iPSC. Methods A variety of cell sources including masseter muscle cells (MMC), dermal fibroblasts (Fib), bone marrow mesenchymal cells (BMC), and Trunk skeletal muscle cells (TMC) from mouse were isolated. These cell sources were then transfected with Yamanaka's factors (Oct4, Sox2, c‐Myc, and Klf‐4) to generate four lineages of iPSCs. These four iPSC cell lineages were differentiated into iPSC‐CMs via 3‐D culture protocols and analyzed for differences in their differentiation potential as well as the efficiency of differentiation. Cardiomyocytes differentiation was analyzed by spontaneous contractions, immunostaining, flow cytometry test, and patch clamp. The epigenetic signatures of somatic cells, iPSCs, and derived Cardiomyocytes were analyzed by Real‐time PCR. Methylation study was used to evaluate epigenetic memory of four lineages of iPSCs. Results Spontaneous beating was observed in 80% colonies of MMC‐derived iPSC‐cardiomyocytes (MMC‐CM), which was significantly higher than other groups. Cardiac genes Isl‐1, Nkx2.5, and GATA4 were also significantly upregulated in MMC‐CM. MMC‐CM exerted robust cardiac functional phenotype, indicated by enhanced contractility and electrophysiological properties. Low methylation levels of the cardiac mesodermal gene (Isl‐1) in MMC and M‐iPSC were similar to neonatal cardiomyocytes and were maintained in MMC‐CM. Cardiac genes were epigenetically silenced in other somatic cells. Conclusion iPSCs derived from masseter muscle cell sources have better cardiogenic differentiation capabilities than other somatic cell sources. Epigenetic memory significantly contributes to the prominent cardiogenic potential of masseter‐derived iPSCs. Support or Funding Information National Institutes of Health grants (HL110740)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.292
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2017
Admission routes1
Has abstractyes

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