MétaCan
Menu
Back to cohort
Record W4389293979 · doi:10.26434/chemrxiv-2023-cmgsv

Novel dihydropteridinone derivatives as potent and selective inhibitors of the understudied human vaccinia-related kinase 1 (VRK1)

2023· preprint· en· W4389293979 on OpenAlexfundno aff
F. Gama, Luiz Antônio Dutra, Michael Hawgood, C.V. dos Reis, Ricardo A. M. Serafim, Marcos Antonio Ferreira, Bruno V. M. Teodoro, Jéssica E. Takarada, André da Silva Santiago, Vitor M. Almeida, C. Gileadi, Priscila Zonzini Ramos, Anita Salmazo, Stanley N. S. Vasconcelos, Micael Rodrigues Cunha, Dimitrios-Ilias Ballourdas, Susanne Mueller, Stefan Knapp, Katlin B. Massirer, Jonathan M. Elkins, O. Gileadi, Alessandra Macarello, Bennie Lemmens, Cristiano R. W. Guimarães, Hátylas Azevedo, Rafael M. Couñago

Bibliographic record

VenueChemRxiv · 2023
Typepreprint
Languageen
FieldMedicine
TopicCancer-related Molecular Pathways
Canadian institutionsnot available
FundersStructural Genomics ConsortiumArgonne National LaboratoryOffice of Research Infrastructure Programs, National Institutes of HealthNational Institute of General Medical SciencesOffice of ScienceNational Institutes of HealthUniversidade Estadual de CampinasDiamond Light SourceU.S. Department of Energy
KeywordsKinomeKinaseCancer researchBiologyCell growthTranslation (biology)Cell biologyMitosisComputational biologyChemistryGeneGeneticsMessenger RNA

Abstract

fetched live from OpenAlex

The human Vaccinia-Related Kinase 1 (VRK1) is highly expressed in various tumor types and plays important roles in cell proliferation and the maintenance of genome integrity. While prior genetic studies indicate that VRK1 inhibition offers therapeutic potential, especially in cancers deficient in VRK2 expression or DNA damage repair, the current lack of suitable VRK1 inhibitors hampers the validation of this kinase as a therapeutic target and the translation of these findings to the clinic. Here, we developed novel VRK1 inhibitors based on BI-D1870, a pteridinone inhibitor of RSK kinases. Our optimized VRK1 inhibitor displays improved kinome-wide selectivity, and effectively mimic cellular outcomes of VRK1 depletion. Notably, VRK1 inhibition triggered severe mitotic errors and genome instability in p53-deficient cells. Together, our findings highlight the potential of VRK1 inhibition in treating p53-deficient tumors and possibly enhancing the efficacy of existing cancer therapies that target DNA stability or cell division.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.035
GPT teacher head0.282
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2023
Admission routes1
Has abstractyes

Explore more

Same venueChemRxivSame topicCancer-related Molecular PathwaysFrench-language works237,207