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Record W4389803484 · doi:10.1101/pdb.prot108342

Automated Egg-Counting Approaches for<i>Aedes aegypti</i>Oviposition Experiments

2023· article· en· W4389803484 on OpenAlexaff
Nicholas Kristoff Tochor, Yunusa Garba Mohammed, Benjamin J. Matthews

Bibliographic record

VenueCold Spring Harbor Protocols · 2023
Typearticle
Languageen
FieldMedicine
TopicMosquito-borne diseases and control
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsAedes aegyptiFecundityBiologyBlood mealAedesKey (lock)ZoologyEcologyLarvaMedicine

Abstract

fetched live from OpenAlex

Egg-laying preferences of mosquitoes can reveal key neurosensory mechanisms informing the decision-making process for this critical behavior. A single blood meal results in a gravid female Aedes aegypti mosquito laying more than 100 eggs. Therefore, egg counting represents a potentially time-consuming and laborious component to behavioral assays, such as those that measure oviposition preference or fecundity. Automated algorithms that count eggs from images can dramatically reduce the time required for this step of data processing and analysis and increase reproducibility associated with having multiple human observers count the eggs. Here, we present two distinct approaches for counting melanized Ae. aegypti eggs laid on white filter paper.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.003
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0030.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0040.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.066
GPT teacher head0.340
Teacher spread0.274 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes1
Has abstractyes

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