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Abstract 13259: Large-Scale Plasma Proteomics Identifies C1QTNF1 as a Potential Causal Risk Factor for Aortic Stenosis

2023· article· en· W4389944251 on OpenAlexaff
Khaled Shelbaya, Victoria Lamberson, Yimin Yang, Pranav Dorbala, Leo F. Buckley, Brian Claggett, Hicham Skali, Line Dufresne, James C. Engert, Ta‐Yu Yang, George Thanassoulis, James S. Floyd, Thomas R. Austin, Anna E. Bortnick, Jorge R. Kizer, Renata Caroline C Costade Freitas, Sasha A. Singh, Elena Aïkawa, Christie M. Ballantyne, Ron C. Hoogeveen, Bing Yu, Josef Coresh, Kuni Matsushita, Amil M. Shah

Bibliographic record

VenueCirculation · 2023
Typearticle
Languageen
FieldMedicine
TopicCardiovascular Health and Risk Factors
Canadian institutionsMcGill University
Fundersnot available
KeywordsMedicineMendelian randomizationInternal medicineConfoundingGenome-wide association studyCardiologyProportional hazards modelOdds ratioGenetic variantsSingle-nucleotide polymorphismGeneticsGenotype

Abstract

fetched live from OpenAlex

Background: Despite the increasing prevalence of aortic stenosis (AS) and associated morbidity, limited data exist regarding circulating risk factors for AS development. Methods: Among Atherosclerosis Risk in Communities study participants with available proteomics (Somascan v4) at study Visit 5 (2011-13; n=4,899; age 76 ± 5 years, 57% women), we used multivariable linear regression to evaluate the association of 4,877 plasma proteins with peak aortic valve (AV) velocity and AV dimensionless index. We then tested their associations, when assessed at study Visit 3 (1993-95; n=11,430; age 60 ± 6, 54% women), with incident AV-related hospitalization post Visit 3 (median follow-up 22, IQR 14 - 25 years) using multivariable Cox PH regression. For the resulting candidate proteins, we tested associations with incident adjudicated AS in the Cardiovascular Health study (CHS) and assessed for potentially causal effects on AS and AV peak velocity using two sample Mendelian Randomization (MR). pQTLs were obtained from 3 previously published European studies, summary statistics for AS from the recently completed TARGET GWAS, and summary statistics for AV peak velocity from an ARIC GWAS. Results: We identified 52 plasma proteins with consistent associations with AV peak velocity, AV dimensionless index, and incident AV hospitalization. Of these 52 proteins, genetic instrumental variables (IVs) for MR analysis were available for 42. After multiple testing correction, a multi-SNP IV for C1QTNF1 demonstrated a potential causal effect on AS, such that higher genetically determined levels of C1QTNF1 associated with greater odds of AS. That same multi-SNP IV also demonstrated concordant MR association with peak AV velocity. C1QTNF1 was also associated with AS events in CHS (Figure). Conclusion: Large-scale proteomics in a longitudinal community-based cohort identifies C1QTNF1, an adiponectin paralog associated with inflammation, as a potential novel risk factor for AS.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.166
Threshold uncertainty score0.685

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.294
Teacher spread0.273 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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