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Record W4390506915 · doi:10.3126/nje.v13i4.61271

Addressing the inequalities in global genetic studies for the advancement of Genetic Epidemiology

2023· editorial· en· W4390506915 on OpenAlexaff
Brijesh Sathian, Edwin van Teijlingen, Bedanta Roy, Russell Kabir, Indrajit Banerjee, Padam Simkhada, Hanadi Al Hamad

Bibliographic record

VenueNepal Journal of Epidemiology · 2023
Typeeditorial
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer Genomics and Diagnostics
Canadian institutionsQuest University Canada
Fundersnot available
KeywordsData scienceWorkflowGenomicsPrecision medicinePersonal genomicsBig dataGenetic dataScale (ratio)Genetic epidemiologyHuman geneticsPopulationComputer scienceBiologyGenomeMedicineData miningGeneticsGeography

Abstract

fetched live from OpenAlex

The human reference genome assembly has been available for two decades, and advancements in sequencing technology have enabled rapid whole-genome sequencing in single institutes. WGS (whole-genome sequencing) data analysis applications will enable large-scale data analysis on multi-clouds, integrate datasets with a population scale, and ensure the reproducibility of publications through modern workflow engines and scalability. In human genetics, expert-knowledge-driven approaches from medical and biological professionals and data-driven approaches from computer science applied to epidemiology, such as AI (artificial intelligence), are required for domain-specific downstream data interpretations. For reliable diagnostic, prognostic, and therapeutic tools, as well as generalized outcomes, genomic studies should involve a wide range of majority and minority populations. The field of genomics in medicine is entering a new era, and to increase the application of gene therapy in the treatment of emerging infections and disorders, there needs to be a united worldwide effort.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.014
metaresearch head score (Gemma)0.045
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Editorial · Consensus signal: Editorial
Teacher disagreement score0.015
Threshold uncertainty score0.072

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0140.045
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0030.003
Bibliometrics0.0030.002
Science and technology studies0.0030.003
Scholarly communication0.0080.007
Open science0.0040.002
Research integrity0.0150.032
Insufficient payload (model declined to judge)0.0130.008

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.187
GPT teacher head0.449
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEditorial

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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