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Record W4390876999 · doi:10.1016/j.chom.2023.12.014

A bacterial sialidase mediates early-life colonization by a pioneering gut commensal

2024· article· en· W4390876999 on OpenAlexafffund
Ekaterina Buzun, Chia-Yun Hsu, Kristija Sejane, Renee Oles, Adriana Vasquez Ayala, Luke R. Loomis, Jiaqi Zhao, Leigh‐Ana Rossitto, Dominic McGrosso, David J. Gonzalez, Lars Bode, Hiutung Chu

Bibliographic record

VenueCell Host & Microbe · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGut microbiota and health
Canadian institutionsCanadian Institute for Advanced Research
FundersNational Institute of Arthritis and Musculoskeletal and Skin DiseasesNational Institutes of HealthUniversity of California, San DiegoFamily Larsson‐Rosenquist FoundationNational Institute of Allergy and Infectious DiseasesJapan Agency for Medical Research and DevelopmentNational Institute of General Medical SciencesCanadian Institute for Advanced ResearchNational Institute of Diabetes and Digestive and Kidney DiseasesChiba UniversityHartwell Foundation
KeywordsBiologyColonizationBacteroides fragilisMicrobiologyCommensalismMicrobiomeBacteroidesMucusMucinBacteriaAntibioticsEcologyBioinformaticsGenetics

Abstract

fetched live from OpenAlex
No abstract in any covered source. Its absence is recorded, not treated as a negative.

No abstract. This is not a gap in this database; OpenAlex has none either. 23.3% of the frame is in this state, and the screen finds HALF as much metaresearch here, so the absence is a measured bias rather than a missing field.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.228
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations38
Published2024
Admission routes2
Has abstractno

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