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Record W4391036002 · doi:10.1016/j.it.2023.12.003

Human germline gain-of-function in STAT6: from severe allergic disease to lymphoma and beyond

2024· article· en· W4391036002 on OpenAlexfundno aff
Mehul Sharma, Narissara Suratannon, Daniel Leung, Safa Barış, Ichiro Takeuchi, Simran Samra, Kumiko Yanagi, Jaime S. Rosa Duque, Mehdi Benamar, Kate L. Del Bel, Mana Momenilandi, Vivien Béziat, Jean‐Laurent Casanova, P. Martin van Hagen, Katsuhiro Arai, Ichiro Nomura, Tadashi Kaname, Pantipa Chatchatee, Hideaki Morita, Talal A. Chatila, YL Lau, Stuart E. Turvey

Bibliographic record

VenueTrends in Immunology · 2024
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmunodeficiency and Autoimmune Disorders
Canadian institutionsnot available
FundersCanadian Institutes of Health ResearchNational Institutes of HealthUniversité de ParisInstitut National Du CancerFondation Schlumberger pour l’Education et la RechercheThailand Science Research and InnovationMarmara ÜniversitesiInstitut des maladies génétiques ImagineUniversity of British ColumbiaChulalongkorn UniversityCroucher FoundationInstitut National de la Santé et de la Recherche MédicaleAgence Nationale de la RechercheJapan Agency for Medical Research and DevelopmentGenome British ColumbiaAgence Nationale de Recherches sur le Sida et les Hépatites ViralesBC Children's HospitalBC Children’s Hospital FoundationRockefeller UniversityLi Ka Shing FoundationSt. Giles FoundationGovernment of CanadaChildren's Hospital FoundationHoward Hughes Medical Institute
KeywordsSTAT6STAT proteinDiseaseImmunologyImmune systemPhenotypeGermlineMedicineGain of functionAllergyBiologyInterleukin 4GeneticsSTAT3Internal medicineGene

Abstract

fetched live from OpenAlex

Signal transducer and activator of transcription (STAT)-6 is a transcription factor central to pro-allergic immune responses, although the function of human STAT6 at the whole-organism level has long remained unknown. Germline heterozygous gain-of-function (GOF) rare variants in STAT6 have been recently recognized to cause a broad and severe clinical phenotype of early-onset, multi-system allergic disease. Here, we provide an overview of the clinical presentation of STAT6-GOF disease, discussing how dysregulation of the STAT6 pathway causes severe allergic disease, and identifying possible targeted treatment approaches. Finally, we explore the mechanistic overlap between STAT6-GOF disease and other monogenic atopic disorders, and how this group of inborn errors of immunity (IEIs) powerfully inform our fundamental understanding of common human allergic disease.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.256
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations43
Published2024
Admission routes1
Has abstractno

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