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The Sjögren's Working Group: The 2023 OMERACT meeting and provisional domain generation

2024· article· en· W4391116056 on OpenAlexaff
Rachael A. Gordon, Yann Nguyen, Nathan Foulquier, Maxime Beydon, Tamer A. Gheita, R. Hajji, Ilfita Sahbudin, Alberta Hoi, Wan‐Fai Ng, José Alexandre Mendonça, Daniel J. Wallace, Beverley Shea, George A. W. Bruyn, Susan M. Goodman, Benjamin A. Fisher, Chiara Baldini, Karina D. Torralba, Hendrika Bootsma, Esen K. Akpek, Sezen Karakus, Alan N. Baer, Soumya D. Chakravarty, Lene Terslev, Maria Antonietta D’Agostino, Xavier Mariette, Dana DiRenzo, Astrid Rasmussen, Athena Papas, Cristina Montoya, Suzanne Arends, Md Yuzaiful Md Yusof, I.A. Pintilie, Blake M. Warner, Katherine M. Hammitt, Vibeke Strand, Coralie Bouillot, Peter Tugwell, Nevsun İnanç, José Luís Andreu, Marie Wahren‐Herlenius, Valérie Devauchelle‐Pensec, Caroline H. Shiboski, A. A. Benyoussef, Sharmila Masli, Adrian Y. S. Lee, Divi Cornec, Simon Bowman, Maureen Rischmueller, Sara S. McCoy, Raphaèle Séror

Bibliographic record

VenueSeminars in Arthritis and Rheumatism · 2024
Typearticle
Languageen
FieldMedicine
TopicSalivary Gland Disorders and Functions
Canadian institutionsSjögren’s Society of CanadaOttawa HospitalUniversity of Ottawa
FundersNational Center for Advancing Translational SciencesServierNational Institutes of HealthArgenxSanofiGlaxoSmithKlineBioClinicaAmgenPfizerKiniksa PharmaceuticalsNational Institute of Dental and Craniofacial ResearchGeorgia Clinical and Translational Science AllianceCelgeneBirmingham Biomedical Research CentreAstraZenecaEli Lilly and CompanyBristol-Myers Squibb
KeywordsMedicineVariety (cybernetics)Multidisciplinary approachIdentification (biology)DiseaseWorking groupDomain (mathematical analysis)Affect (linguistics)Internal medicine

Abstract

fetched live from OpenAlex

Sjögren's disease (SjD) is a systemic autoimmune exocrinopathy with key features of dryness, pain, and fatigue. SjD can affect any organ system with a variety of presentations across individuals. This heterogeneity is one of the major barriers for developing effective disease modifying treatments. Defining core disease domains comprising both specific clinical features and incorporating the patient experience is a critical first step to define this complex disease. The OMERACT SjD Working Group held its first international collaborative hybrid meeting in 2023, applying the OMERACT 2.2 filter toward identification of core domains. We accomplished our first goal, a scoping literature review that was presented at the Special Interest Group held in May 2023. Building on the domains identified in the scoping review, we uniquely deployed multidisciplinary experts as part of our collaborative team to generate a provisional domain list that captures SjD heterogeneity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.013
metaresearch head score (Gemma)0.010
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.080
Threshold uncertainty score0.269

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0130.010
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0040.002
Open science0.0020.005
Research integrity0.0050.003
Insufficient payload (model declined to judge)0.0800.036

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.243
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations9
Published2024
Admission routes1
Has abstractno

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