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Record W4391116462 · doi:10.1101/2024.01.22.576727

NeuroCSF: an fMRI method to measure contrast sensitivity function in human visual cortex

2024· preprint· en· W4391116462 on OpenAlexafffund
L. Goulet, Reza Farivar

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldNeuroscience
TopicVisual perception and processing mechanisms
Canadian institutionsMcGill University
FundersCanadian Institutes of Health Research
KeywordsSpatial frequencyFovealContrast (vision)Visual cortexVisual fieldPopulationVoxelFunctional magnetic resonance imagingReceptive fieldNeuroimagingNeurosciencePsychologyPhysicsArtificial intelligenceComputer scienceOpticsMedicineOphthalmology

Abstract

fetched live from OpenAlex

Abstract The contrast sensitivity function (CSF) describes a range of spatial frequencies (SF) that are detectable at a given level of contrast and is a very valuable tool both in clinical and fundamental research. However, despite its immense value, the full potential of the CSF has not been utilized in every aspect of clinical research due to time limits and patient factors. We propose neuroCSF as a new method for measuring the CSF across the visual field directly from brain activity, and with minimal demand from participants. NeuroCSF is a computational model that estimates voxel-wise CSF parameters (i.e., peak contrast sensitivity, peak spatial frequency, and spatial frequency bandwidth) from functional magnetic resonance imaging (fMRI) signals, under controlled visual stimulation conditions. The approach extends the population spatial frequency tuning (Aghajari, Vinke, & Ling, 2020) and population receptive field (Dumoulin & Wandell, 2008) methods to provide the first characterization of a full CSF using neuroimaging. We observe that across early visual areas (V1, V2 and V3), the CSF peak spatial frequency and spatial frequency cutoff are significantly higher for foveal eccentricity and decrease at parafoveal eccentricities. Conversely, SF bandwidth slowly increases with eccentricity, while peak contrast sensitivity remains constant with eccentricity for all early visual areas. Thus, cortical CSF estimates vary systematically with eccentricity. The neuroCSF approach opens new perspectives for the study of cortical visual functions in various disorders where the CSF is impacted, such as amblyopia, traumatic brain injury, and multiple sclerosis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.315
Teacher spread0.270 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2024
Admission routes2
Has abstractyes

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