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Record W4391209668 · doi:10.3998/ptpbio.5563

Towards a More General Theory of Evolution by Natural Selection: A Manifesto

2024· article· en· W4391209668 on OpenAlexaff
François Papale, W. Ford Doolittle

Bibliographic record

VenuePhilosophy Theory and Practice in Biology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEvolution and Genetic Dynamics
Canadian institutionsDalhousie UniversityUniversité Laval
FundersGordon and Betty Moore Foundation
KeywordsComputer scienceEnvironmental science

Abstract

fetched live from OpenAlex

In this manifesto for a more comprehensive account of evolution by natural selection (ENS), we draw on Hull’s framework to expand the reach of Darwinian explanations. His approach is centered on the notions of interactor and replicator. He (and many others following him) defines the interactor in terms of cohesiveness. Often, such cohesiveness is cashed out by the vertical transmission to the next generation of the replicators that constitute the interactors. While we maintain the importance of the reciprocal influence of interactors and replicators (the differential extinction and proliferation of interactors leads to the differential extinction and proliferation of the replicators that produce them) central to Hull’s framework, we downplay the importance of the cohesiveness of interactors and eliminate any need for lineage formation among them. This suggested revision of the interactor synthesizes various recent contributions in the field, and it allows the interactor/replicator framework to tackle more complex entities. Our approach, however, stands in stark opposition to the classical approach to ENS centered on lineage formation. In this paper, we present our view and argue that it should replace the classical approach in structuring future work in evolutionary biology.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.005
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.007
Threshold uncertainty score0.028

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0050.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0020.017
Scholarly communication0.0060.012
Open science0.0020.002
Research integrity0.0040.006
Insufficient payload (model declined to judge)0.0070.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.311
Teacher spread0.302 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2024
Admission routes1
Has abstractyes

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