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Curriculum Learning for Improved Tumor Segmentation in PET Imaging

2022· article· en· W4391249009 on OpenAlexaff
Fereshteh Yousefirizi, Carlos Uribe, Arman Rahmim

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldMedicine
TopicMedical Imaging Techniques and Applications
Canadian institutionsUniversity of British ColumbiaSpinal Cord Injury BCBC Cancer Agency
FundersHORIZON EUROPE Health
KeywordsDiceCurriculumSegmentationConvolutional neural networkComputer scienceArtificial intelligenceBootstrapping (finance)Machine learningPattern recognition (psychology)MathematicsStatisticsPsychology

Abstract

fetched live from OpenAlex

In this paper, we considered the effect of nonuniform sampling of the training data i.e. curriculum learning (CL) on the performance of 3D convolutional neural network for tumor segmentation in PET images. We applied two different curriculums for providing the training data to a convolutional neural network (a 3D U-Net with squeeze and excitation normalization). We applied the easy to hard curriculums by (i) bootstrapping scoring and (ii) self-paced scoring functions. We used augmentation of training data to improve the generalization capability of the trained model and focal loss to take into account the rare samples in any curriculum of training. The learning curves showed that the curriculums based on bootstrapping and self-paced functions speed up the learning while reverse ordering (anti-scoring) makes the training slower and degrades the test performance. The learning by random (uniform) curriculum converges slower. The segmentation results on test data showed that an effective CL via bootstrapping improved segmentation performance and outperformed the trained models obtained via SPS and random curriculums (Dice_bootsrtapping=0.78±0.05 vs. Dice_random=0.72±0.17 vs. Dice_sel-paced=0.63 ± 0.1). In fact, SPS based approach showed a lower mean dice score compared to random curriculum. Anti-Scoring curriculum had the lowest performance in terms of Dice score (0.51±0.21), that confirmed the effect of curriculum on the learning performance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.319
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

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