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Choroidal Nevi Classification in Fundus Images Using a Patch-Based Deep Learning Approach

2023· article· en· W4391306588 on OpenAlexaff
Mehregan Biglarbeiki, Emad A. Mohammed, Roberto Souza, Behrouz H. Far, Ezekiel Weis, Trafford Crump

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldMedicine
TopicRetinal and Optic Conditions
Canadian institutionsThompson Rivers UniversityUniversity of AlbertaUniversity of Calgary
Fundersnot available
KeywordsComputer scienceUpsamplingArtificial intelligenceFundus (uterus)Class (philosophy)Deep learningPattern recognition (psychology)Identification (biology)Image (mathematics)MedicineRadiology

Abstract

fetched live from OpenAlex

Choroidal nevi are difficult to identify and require regular eye screening. While high-resolution fundus images are commonly used to identify choroidal nevi, manual review is time-consuming and requires specialized knowledge. Deep learning shows promise for accurate classification of eye diseases. However, these models require extensive labelled data, which is challenging for some medical conditions, like choroidal nevi. The objective of this study is to use a patch-based approach to classify fundus images as having choroidal nevus or not. We address data limitations, and the challenges posed by high-resolution images, through two key strategies. First, we uniformly extract tiled patches, expanding the training dataset, allowing a more detailed analysis of lesions, and preserving image quality by avoiding downsampling. However, this introduces a class imbalance issue which we effectively address through a second strategy involving different augmentations applied to the underrepresented class, mitigating the class imbalance issue, and further increasing the training set size. This approach achieved 92.61% accuracy, 90.47% recall, and 93.82% precision, outperforming the model trained on full-size images. We conclude that using a patch-based approach with noise and contrast enhancements outperforms conventional and simpler patch-based models.Clinical Relevance: This research tests a method for automating choroidal nevi identification to inform clinical diagnosis.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.668
Threshold uncertainty score0.276

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.071
GPT teacher head0.322
Teacher spread0.251 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2023
Admission routes1
Has abstractyes

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