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Record W4392011062 · doi:10.1016/s2589-7500(23)00250-9

Normative modelling of brain morphometry across the lifespan with CentileBrain: algorithm benchmarking and model optimisation

2024· review· en· W4392011062 on OpenAlexafffund
Ruiyang Ge, Yuetong Yu, Yi Xuan Qi, Yunan Vera Fan, Shiyu Chen, Chuntong Gao, Shalaila S. Haas, Faye New, Henry Brodaty, Rachel M. Brouwer, Randy L. Buckner, Xavier Caseras, Fabrice Crivello, Eveline A. Crone, Susanne Erk, Simon E. Fisher, Barbara Franke, David C Glahn, Udo Dannlowski, Dominik Grotegerd, Oliver Gruber, Hilleke E. Hulshoff Pol, Gunter Schumann, Christian K Tamnes, Henrik Walter, Lara M. Wierenga, Neda Jahanshad, Paul M. Thompson, Sophia Frangou

Bibliographic record

VenueThe Lancet Digital Health · 2024
Typereview
Languageen
FieldMedicine
TopicAdvanced Neuroimaging Techniques and Applications
Canadian institutionsUniversity of British Columbia
FundersFP7 EuratomHORIZON EUROPE Excellent ScienceH2020 Excellent ScienceEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentNational Center for Research ResourcesNational Institute of Biomedical Imaging and BioengineeringNational Institute on AgingKnut och Alice Wallenbergs StiftelseNational Cancer InstituteEuropean Research CouncilSeventh Framework ProgrammeRadboud UniversiteitInstituto de Salud Carlos IIIHelse Sør-Øst RHFNational Center for Advancing Translational SciencesMedical Research Council CanadaMedical Research CouncilNational Institutes of HealthHorizon 2020 Framework ProgrammeNational Institute of Mental HealthVetenskapsrådetNorges ForskningsrådInstituto de Investigación Marqués de ValdecillaUniversity of British ColumbiaNederlandse Organisatie voor Wetenschappelijk OnderzoekNational Health and Medical Research CouncilRussian Foundation for Basic ResearchBundesministerium für Bildung und ForschungNational Institute on Drug AbuseIcahn School of Medicine at Mount Sinai
KeywordsCovariateNormativeBenchmarkingMultivariate statisticsNeuroimagingRobustness (evolution)AlgorithmComputer scienceArtificial intelligenceMachine learningStatisticsMathematicsEconometricsPsychologyBiology

Abstract

fetched live from OpenAlex

The value of normative models in research and clinical practice relies on their robustness and a systematic comparison of different modelling algorithms and parameters; however, this has not been done to date. We aimed to identify the optimal approach for normative modelling of brain morphometric data through systematic empirical benchmarking, by quantifying the accuracy of different algorithms and identifying parameters that optimised model performance. We developed this framework with regional morphometric data from 37 407 healthy individuals (53% female and 47% male; aged 3-90 years) from 87 datasets from Europe, Australia, the USA, South Africa, and east Asia following a comparative evaluation of eight algorithms and multiple covariate combinations pertaining to image acquisition and quality, parcellation software versions, global neuroimaging measures, and longitudinal stability. The multivariate fractional polynomial regression (MFPR) emerged as the preferred algorithm, optimised with non-linear polynomials for age and linear effects of global measures as covariates. The MFPR models showed excellent accuracy across the lifespan and within distinct age-bins and longitudinal stability over a 2-year period. The performance of all MFPR models plateaued at sample sizes exceeding 3000 study participants. This model can inform about the biological and behavioural implications of deviations from typical age-related neuroanatomical changes and support future study designs. The model and scripts described here are freely available through CentileBrain.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.012
metaresearch head score (Gemma)0.034
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.012
Threshold uncertainty score0.065

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0120.034
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0020.002
Science and technology studies0.0000.001
Scholarly communication0.0030.002
Open science0.0030.002
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.194
GPT teacher head0.435
Teacher spread0.241 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations108
Published2024
Admission routes2
Has abstractyes

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