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Record W4392344620 · doi:10.1101/2024.02.22.581646

Lifespan reference curves for harmonizing multi-site regional brain white matter metrics from diffusion MRI

2024· preprint· en· W4392344620 on OpenAlexfundno aff
Alyssa H. Zhu, Talia M. Nir, Shayan Javid, Julio E. Villalón‐Reina, Amanda Rodrigue, Lachlan T. Strike, Greig I. de Zubicaray, Katie L. McMahon, Margaret J. Wright, Sarah E. Medland, John Blangero, David C. Glahn, Peter Kochunov, Asta K. Håberg, Paul M. Thompson, Neda Jahanshad

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldMedicine
TopicAdvanced Neuroimaging Techniques and Applications
Canadian institutionsnot available
FundersBiotechnology and Biological Sciences Research CouncilCanadian Institutes of Health ResearchDirectorate for Biological SciencesNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierNational Institute of Mental HealthPfizerNovartis Pharmaceuticals CorporationMedical Research CouncilBiogenEli Lilly and CompanyBristol-Myers SquibbBioClinicaU.S. Department of DefenseMeso Scale DiagnosticsAlzheimer's Disease Neuroimaging InitiativeEisaiAlzheimer's Association
KeywordsWhite matterDiffusion MRIDiffusionMedicineMagnetic resonance imagingPhysicsRadiologyThermodynamics

Abstract

fetched live from OpenAlex

Age-related white matter (WM) microstructure maturation and decline occur throughout the human lifespan with a unique trajectory in the brain, complementing the process of gray matter development and degeneration. Normative modeling can establish lifespan reference curves for typical WM microstructural aging patterns by pooling data from many independent studies that span different age ranges. Here, we create such reference curves by harmonizing and pooling diffusion MRI (dMRI)-derived data from ten public datasets (N = 40,898 subjects; age: 3-95 years; 47.6% male). We tested three ComBat harmonization methods to create normative curves for regional diffusion tensor imaging (DTI) based fractional anisotropy (FA), a widely used metric of WM microstructure, extracted using the ENIGMA-DTI pipeline. ComBat-GAM harmonization provided multi-study trajectories most consistent with neuroscientific knowledge regarding WM maturation peaks. Harmonized FA metrics were used to create lifespan reference curves, which were validated with test-retest data and used to assess the effect of the ApoE4 risk factor for dementia in WM across the lifespan. We found significant associations between ApoE4 and FA in WM regions associated with neurodegenerative disease even in healthy individuals across the lifespan, with regional age-by-genotype interactions. Within-study associations were not affected by normative harmonization, ensuring that large-scale harmonized studies can be conducted across the lifespan, even from distinct age-restricted studies, without compromising individual study findings. Our lifespan reference curves and tools to harmonize new dMRI data to the curves are available through our new Python package, eHarmonize (https://github.com/ahzhu/eharmonize).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.021
metaresearch head score (Gemma)0.086
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.021
Threshold uncertainty score0.112

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0210.086
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0070.005
Science and technology studies0.0010.001
Scholarly communication0.0030.003
Open science0.0020.004
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0060.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.104
GPT teacher head0.319
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2024
Admission routes1
Has abstractyes

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