MétaCan
Menu
Back to cohort
Record W4392588779 · doi:10.1016/j.gimo.2024.101212

P318: Ironing out the BPAN phenotypic spectrum: A report of three new BPAN cases and review of the literature

2024· article· en· W4392588779 on OpenAlexaffabout
Caitlin Goedhart, Shuaa Basalom, Stephanie Skinner, Caroline Brost

Bibliographic record

VenueGenetics in Medicine Open · 2024
Typearticle
Languageen
FieldMedicine
TopicAtrial Fibrillation Management and Outcomes
Canadian institutionsSaskatchewan Health AuthorityUniversity of Saskatchewan
Fundersnot available
KeywordsMedicine

Abstract

fetched live from OpenAlex

Neurodegeneration with brain iron accumulation (NBIA) refers to a spectrum of disorders, which as the name suggests, involve abnormal iron accumulation within the brain that leads to progressive nervous system degeneration. NBIA type 5, which is more commonly referred to as Beta-propeller protein-associated neurodegeneration (BPAN), is one example of a disorder within this group. BPAN is an X-linked condition and is typically caused by loss of function mutations in the WDR45 gene. Classically, BPAN has been characterized by global developmental delay and seizures in childhood, followed by neurodegeneration in adulthood. Neurological symptoms can progress to include parkinsonism, dystonia, and dementia. Since it was first reported in 2012, the phenotypic spectrum observed with BPAN has greatly expanded. The most recent review of disease associated with WDR45 was in 2020, at which time there were 123 individuals identified with WDR45-related disease. New case reports of patients with BPAN continue to be published, and additional patients continue to be diagnosed. We have identified three new cases of BPAN as well as provided updated clinical information on a previously reported case. All four patients are followed at a single center in Saskatchewan, Canada. Identification of WDR45 variants was accomplished through multi-gene testing panels or whole exome sequencing. Of the three unpublished cases, two of the patients were found to have de novo pathogenic frameshift variants (NM_007075.3: c.964del, p.Lys319Argfs*11 and NM_007075.3: c.561_564dup, p.Ile189Hisfs*8). The third patient was found to have a missense variant of uncertain significance (NM_007075.3: c.359T>C, p.Ile62Val) but with clinical signs and symptoms supporting a BPAN diagnosis. The patients range from 10 to 17 years of age. All the patients in the cohort are followed for seizures, however, only the oldest patient has started to exhibit some features of parkinsonism. One of the patients presents with iron deposition in the lungs, which has yet to be reported with WDR45-related disease in the literature. Improved awareness of the phenotypic variability of BPAN, the uptake of more comprehensive diagnostic modalities like whole exome sequencing, as well as advances in neuroimaging have greatly improved clinicians’ abilities to diagnose the disease. We aimed to provide a case series including three newly identified patients as well as provide an update on BPAN literature. This work further elucidates the phenotypic variability seen with WDR45 variants. In turn, it contributes to the body of literature regarding WDR45 related disease, which ultimately serves to facilitate earlier disease diagnosis for affected patients.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.734
Threshold uncertainty score0.250

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.112
GPT teacher head0.401
Teacher spread0.289 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

Explore more

Same venueGenetics in Medicine OpenSame topicAtrial Fibrillation Management and OutcomesFrench-language works237,207