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Record W4392588782 · doi:10.1016/j.gimo.2024.101239

P345: Expanding the phenotype of an ultra-rare neurodevelopmental disorder associated with NACC1

2024· article· en· W4392588782 on OpenAlexaff
Angélica Moresco, Dorsa Kord, Sunita Venkateswaran

Bibliographic record

VenueGenetics in Medicine Open · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics and Neurodevelopmental Disorders
Canadian institutionsWestern University
Fundersnot available
KeywordsPhenotypeNeurodevelopmental disorderMedicineGeneticsBiologyPsychiatryAutismGene

Abstract

fetched live from OpenAlex

NACC1 gene encodes Nucleus Accumbens Associated Protein 1 (NAC1), which is a ubiquitously expressed protein that contains a BTB/POZ domain and is primarily localized to cell nuclei, where it acts as a transcriptional regulator. It has been linked to multiple cellular processes, including cell cycle control and tumorigenesis, embryonic stem cell regulation, excitatory synaptic plasticity, as well as chromatin remodeling. It’s role in the progression, survival, and recurrence of numerous carcinomas has been extensively studied over the last years. More recently a recurrent de novo variant (c.892C>T) in NACC1 has been associated with a neurodevelopmental disorder. NACC1-related disorder or Neurodevelopmental disorder with Epilepsy, Cataracts, Feeding difficulties, and delayed brain Myelination (NECFM) is a relatively newly identified, rare genetic condition associated with severe neurodevelopmental delays and/or intellectual disability, hypotonia, feeding difficulties resulting in failure to thrive, acquired microcephaly, and in some cases, bilateral cataracts, epilepsy including infantile spasms, incapacitating episodic irritability of unclear etiology, repetitive stereotypic motor behaviors and sleep disorder. Some reported cases showed cerebral atrophy and delayed myelination on cerebral imaging. Very few affected individuals (16) have been reported in the literature to date. All patients presented with a highly similar phenotype and the same de novo variant (c.892C>T) in NACC1. Recently functional studies demonstrated that this variant impairs glutamatergic neurotransmission in a dominant negative manner. Here, we describe a 21-month-old female, who presented at 7 months of age with failure to thrive, poor feeding, acquired microcephaly, developmental delay, bilateral congenital cataracts, subcutaneous hemangiomas, and congenital dysplastic nevus. She was born to a healthy mother with unremarkable pregnancy and birth. Despite normal birth parameters, microcephaly manifested by 4 months, with subsequent developmental regression in gross motor skills and significant delays in other domains of development. Trio whole exome sequencing revealed a heterozygous, de novo, pathogenic variant in NACC1(NM_052876.4):c.892C>T p.(Arg298Trp). Brain MRI at 8 months showed lobal volume loss, thin corpus callosum, T2 hyperintensities and thinning of periventricular white matter, delay in myelination status, and prominent Virchow Robin spaces. At age 1, she developed startle myoclonus, especially triggered by light stimulus, sleep myoclonus, as well as clinical episodes consistent with tonic seizures. She also experienced episodes of irritability and inconsolability with no identifiable triggers lasting 3-5 days. EEG did not show hypsarrhythmia, epileptiform activity or a photoparoxysmal response, however, did demonstrate background slowing and intermittent rhythmic slow wave activity. Few patients with NECFM have been described in the literature to date. Our case contributes to the understanding of the clinical spectrum associated with NACC1-related disorder and highlights the need for comprehensive genetic evaluations in patients with neurodevelopmental disorders. In addition to the irritability and stereotypies consistent with the recent reports, we have witnessed non-epileptic startle myoclonus in our patient, who also presented with dysplastic nevus and vascular malformations that have not been previously described. Long-term follow-up is needed to further delineate the significance of each of these findings and any potential risks or additional features. Recently, functional studies have shown to impair glutaminergic transmission therefore treatments targeting this pathway may help ameliorate both the seizures as well as the irritability and can lead to more effective therapeutic strategies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.717
Threshold uncertainty score0.557

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.292
Teacher spread0.274 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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