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Record W4393060855 · doi:10.5943/mycosphere/14/1/23

Global consortium for the classification of fungi and fungus-like taxa

2023· article· en· W4393060855 on OpenAlexfundno aff
KD Hyde, MA Abdel-Wahab, Jafar Abdollahzadeh, Pranami D. Abeywickrama, S Absalan, Naghmeh Afshari, AM Ainsworth, O. Yu. Akulov, VV Aleoshin, Abdullah M. Al‐Sadi, Pablo Alvarado, Artur Alves, Genivaldo Alves-Silva, Mario Amalfi, Yulia Amira, TB Amuhenage, J.G. Anderson, Vladimír Antonín, Souhila Aouali, André Aptroot, CCS Apurillo, João P. M. Araújo, Hiran A. Ariyawansa, A Armand, Elangovan Arumugam, Raheleh Asghari, V. Atienza, Shubhi Avasthi, Eduardo Bessa Azevedo, AH Bahkali, Mounes Bakhshi, Z. Banihashemi, DF Bao, H-O Baral, Marisa Barata, F. R. Barbosa, RN Barbosa, R.W. Barreto, Christiane Baschien, DB Belamesiatseva, M Bennett Reuel, Ishika Bera, JDP Bezerra, JL Bezerra, DJ Bhat, Chitrabhanu S. Bhunjun, María Virginia Bianchinotti, Janusz Błaszkowski, A Blondelle, Teun Boekhout, Gregory Bonito, Saranyaphat Boonmee, N Boonyuen, Carlo Bregant, Patrick Buchanan, Digvijayini Bundhun, Gaëtan Burgaud, Treena I. Burgess, Bart Buyck, Milay Cabarroi-Hernández, MES Cáceres, Maria Filomena Caeiro, MF Cai, Mark S. Calabon, M Callalli, JF Cano-Lira, Taimy Cantillo Pérez, Benyi Cao, J.R. Carlavilla, Agostinho Carvalho, RF Castañeda-Ruiz, Lisa A. Castlebury, Oscar Castro-Jauregui, MDV Catania, LH Cavalcanti, Jonathan Cazabonne, ML Cedeño-Sanchez, S Chaharmiri-Dokhaharani, Napalai Chaiwan, Nilanjan Chakraborty, Priscila Chaverrí, Ratchadawan Cheewangkoon, Hubiao Chen, Chun‐Yao Chen, KH Chen, Jie Chen, Qian Chen, Wen‐Hua Chen, YP Chen, KWT Chethana, Claudia Coleine, T. Velasco Conde, MA Corazon-Guivin, Alonso Cortés-Pérez, DH Costa-Rezende, Régis Courtecuisse, JA Crouch, PW Crous, Bao‐Kai Cui, Cui Yy, DKA da Silva, Gladstone Alves da Silva, IR da Silva, Ana Carla da Silva Santos, DQ Dai, YC Dai, Ulrike Damm, Валерій Дармостук, Zoha Daroodi, Kanad Das, Naveed Davoodian, EA Davydov, MC Dayarathne, Cony Decock, MD de Groot, André De Kesel, R. D. Lange, G. Delgado, CM Denchev, TT Denchev, NT de Oliveira, Nimali I. de Silva, Francisco Adriano de Souza, Bryn T. M. Dentinger, Bandarupalli Devadatha, José Carmine Dianese, Bálint Dima, AG Diniz, Asha J. Dissanayake, LS Dissanayake, HH Doğan, Mingkwan Doilom, Somayeh Dolatabadi, Wei Dong, ZY Dong, LA Dos Santos, ER Drechsler-Santos, TY Du, Manish Kumar Dubey, Arun Kumar Dutta, Eleonora Egidi, Todd F. Elliott, MS Elshahed, M Erdoğdu, Damien Ertz, Javier Etayo, Evans Hc, Xueling Fan, YG Fan, AG Fedosova, Jack W. Fell, Isabel Fernandes, AL Firmino, Patrícia Oliveira Fiúza, Adam Flakus, CA Fragoso de Souza, Jens C. Frisvad, Sally C. Fryar, Toni Gabaldón, AJ Gajanayake, L. A. Galindo, PB Gannibal, Dania García, SR García-Sandoval, Isaac Garrido‐Benavent, Laura Garzoli, AK Gautam, Zhenyu Ge, DJ Gené, Eleni Gentekaki, Masoomeh Ghobad‐Nejhad, AJ Giachini, Gibertoni Tb, Aristóteles Goés‐Neto, Deecksha Gomdola, AR Gomes de Farias, SP Gorjón, BT Goto, MM Granados-Montero, Gareth Griffith, J.Z. Groenewald, Marizeth Groenewald, Hans‐Peter Grossart, Cécile Gueidan, Ashan Gunarathne, Sugantha Gunaseelan, LFP Gusmão, Alejandra C. Gutierrez, Laura Guzmán‐Dávalos, D Haelewaters, Roy E. Halling, YF Han, KK Hapuarachchi, CB Harder, TC Harrington, T Hattori, MQ He, Shuang‐Hui He, SH He, Rosanne Healy, M Herández-Restrepo, Gabriela Heredia, KT Hodge, María E. Holgado-Rojas, Sinang Hongsanan, Egon Horak, Tsuyoshi Hosoya, Jos Houbraken, SK Huang, Naruemon Huanraluek, JS Hur, VG Hurdeal, VP Hustad, Marco Iotti, Teresa Iturriaga, E Jafar, Przemysław Janik, R.G. Udeni Jayalal, SC Jayasiri, Ruvishika S. Jayawardena, Rajesh Jeewon, GH Jerônimo, AL Jesus, J. Jin, Peter R. Johnston, Ebg Jones, Yogesh Joshi, Alfredo Justo, Patricia Kaishian, Makoto Kakishima, Malarvizhi Kaliyaperumal, G. N. Kang, JC Kang, Omid Karimi, С. И. Карпов, SC Karunarathna, Manfred Kaufmann, Martin Kemler, Kezhocuyi Kezo, Sabin Khyaju, Martín Kirchmair, PM Kirk, MJ Kitaura, Isabell Klawonn, Miroslav Kolařík, Alejandro Kong, Francisco Kuhar, Martin Kukwa, S. Kumar, Ivana Kušan, Carlos Lado, K-H Larsson, KPD Latha, HB Lee, Marco Leonardi, DL Leontyev, AS Lestari, CJY Li, DW Li, H. Li, H-Y Li, Lin Li, QR Li, WL Li, Yi Li, YC Li, CF Liao, Kare Liimatainen, YW Lim, Chuan-Gen Lin, Benedetto Teodoro Linaldeddu, CC Linde, MM Linn, Fang Liu, Jian‐Kui Liu, Ning-Guo Liu, Simin Liu, Shi‐Liang Liu, Liu Xf, XY Liu, Liu Xz, ZB Liu, Li Lu, YZ Lu, Thatsanee Luangharn, JJ Luangsaard, HT Lumbsch, Saisamorn Lumyong, Liang Luo, Ming Luo, Zong-Long Luo, Jie Ma, Álisson Rocha Machado, AD Madagammana, Hugo Madrid, Franco Magurno, Donát Magyar, Nanjaian Mahadevan, Yushanjiang Maimaiti, Elaine Malosso, DS Manamgoda, Ishara S. Manawasinghe, Ausana Mapook, DS Marasinghe, Melissa Mardones, Yasmina Marín-Felix, Roberto Márquez, Hossein Masigol, Neven Matočec, Tom W. May, E. H. C. McKenzie, Angelina de Meiras-Ottoni, ARL Mendes, Santiago Montero Mendieta, QF Meng, Audrius Menkis, Nelson Menolli, Armin Mešić, JG Meza Calvo, K.G. Mikhailov, SL Miller, Bibiana Moncada, J-M Moncalvo, Josiane Santana Monteiro, M Monteiro, HM Mora-Montes, P-A Moreau, GM Mueller, S Mukhopadyay, Ramesh Murugadoss, LG Nagy, Mousa Najafiniya, CM Nanayakkara, CC Nascimento, 裕次 堀内, M.C. Neves, Sigrid Neuhauser, AGT Niego, RH Nilsson, Tuula Niskanen, Nicolás Niveiro, MT Noorabadi, M.E. Noordeloos, Chada Norphanphoun, NB Nuñez Otaño, RP O’Donnell, Fritz Oehl, Ibai Olariaga, FP Orlando, KL Pang, Viktor Papp, J Pawłowska, Ursula Peintner, Dhandevi Pem, OL Pereira, Rekhani H. Perera, Jesús Pérez‐Moreno, Sergio Pérez‐Ortega, Gábor Péter, AJL Phillips, M Phonemany, Chayanard Phukhamsakda, Kunthida Phutthacharoen, Meike Piepenbring, CLA Pires-Zottarelli, George O. Poinar, A Pošta, Miguel A. Prieto, Itthayakorn Promputtha, CA Quandt, Renate Radek, K Rahnama, K. Govinda Raj, Kunhiraman C. Rajeshkumar, Teppo Rämä, Gerhard Rambold, Virginia Ramírez-Cruz, Séréna Rasconi, AR Rathnayaka, Mubashar Raza, GC Ren, Gerardo Robledo, Pamela Rodriguez‐Flakus, Anna Ronikier, Walter Rossi, Martin Ryberg, L. Ryvarden, CA Salvador‐Montoya, Bandana Samant, BC Samarakoon, Milan C. Samarakoon, Iván Sánchez‐Castro, Marisol Sánchez‐García, Marcelo Sandoval‐Denis, A L C M de Azevedo Santiago, Brianna Santamaria, ACS Santos, VV Sarma, A. Savchenko, Kyryll Savchenko, R. K. Saxena, Markus Scholler, Nathan Schoutteten, Elaheh Seifollahi, Laura Selbmann, F Selçuk, Indunil C. Senanayake, T. G. Shabashova, H. F. Shen, YM Shen, AGS SilvaFilho, DR Simmons, Ram Singh, EB Sir, Chang-Ge Song, Cristina Maria de Souza‐Motta, OP Sruthi, Marc Stadler, Alberto M. Stchigel, Janet Stemler, SL Stephenson, JFH Strassert, HL Su, Lei Su, S Suetrong, Bobby P. Sulistyo, YF Sun, YR Sun, Sten Svantesson, Phongeun Sysouphanthong, S Takamatsu, Toh Hii Tan, Kazuaki Tanaka, AMC Tang, Xueyuan Tang, JB Tanney, NM Tavakol, JE Taylor, L Tedersoo, Danushka S. Tennakoon, GK Thamodini, Marco Thines, Vinodhini Thiyagaraja, Naritsada Thongklang, PV Tiago, Qing Tian, WH Tian, Leif Tibell, Sanja Tibell, Saowaluck Tibpromma, Zdenko Tkalčec, Michal Tomšovský, Merje Toome‐Heller, Guifré Torruella, Andrei Tsurykau, Dhanushka Udayanga, Merve Ulukapı, WA Untereiner, Blagoy Uzunov, LG Valle, Warre Van Caenegem, Silke Van den Wyngaert, Nicolas Van Vooren, P. Vélez, Verma Rk, LC Vieira, WAS Vieira, Alfredo Vizzini, Alison Walker, A.K. Walker, Dhanushka N. Wanasinghe, Wang Cg, K Wang, Wang Sx, Xiaoyan Wang, Yong Wang, N Wannasawang, Felipe Wartchow, DP Wei, XL Wei, JF White, NN Wijayawardene, SN Wijesinghe, DSA Wijesundara, Komsit Wisitrassameewong, FR Worthy, Feng Wu, Guoliang Wu, Harry X. Wu, Nan Wu, WP Wu, Christian Wurzbacher, YP Xiao, YR Xiong, LJ Xu, Rui Xu, RF Xu, RJ Xu, TM Xu, L. S. Yakovchenko, JY Yan, Hui Yang, Jing Yang, ZL Yang, YH Yang, Neelamanie Yapa, Erandi Yasanthika, NH Youssef, FM Yu, Q Yu, YX Yu, ZF Yu, HS Yuan, Andrey Yurkov, Doustmorad Zafari, JC Zamora, R. Zare, Mengyan Zeng, NK Zeng, Xiang‐Yu Zeng, F Zhang, H Zhang, JF Zhang, Jy Zhang, Qinyu Zhang, Shengnan Zhang, Wei Zhang, Yu Zhang, Zhang Yx, CL Zhao, Heng Zhao, Qi Zhao, Rui-Lin Zhao, LW Zhou, Mo Zhou, MP Zhurbenko, HH Zin, Laura Zucconi

Bibliographic record

VenueMycosphere · 2023
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsnot available
FundersFundação para a Ciência e a TecnologiaNational Science and Technology CouncilUniversidade Federal de Mato Grosso do SulFundação Amparo e Desenvolvimento da PesquisaInnovációs és Technológiai MinisztériumNorwegian Biodiversity Information CentreMinistry of Science and ICT, South KoreaScience and Engineering Research BoardMushroom Research FoundationTamil Nadu State Council for Higher EducationIranian Research Institute of Plant ProtectionSvenska Forskningsrådet FormasHrvatska Zaklada za ZnanostNational Research Foundation of KoreaNational Key Research and Development Program of ChinaMagyar Tudományos AkadémiaChina Postdoctoral Science FoundationGuangzhou Municipal Science and Technology BureauNatural Science Foundation of Shandong ProvinceChiang Mai UniversityChina Scholarship CouncilInstytut Botaniki im. W. Szafera Polskiej Akademii NaukCoordenação de Aperfeiçoamento de Pessoal de Nível SuperiorEesti TeadusagentuurNemzeti Kutatási, Fejlesztési és Innovaciós AlapMinistério da Ciência, Tecnologia e Ensino SuperiorNational Research FoundationRussian Science FoundationMae Fah Luang UniversityDeutsche ForschungsgemeinschaftJapan Society for the Promotion of ScienceCouncil for Higher EducationConselho Nacional de Desenvolvimento Científico e TecnológicoChina Building Materials AcademyNational Natural Science Foundation of ChinaFundação de Apoio ao Desenvolvimento do Ensino, Ciência e Tecnologia do Estado de Mato Grosso do SulFundação de Amparo à Pesquisa do Estado de Minas GeraisDepartment of Science and Technology, Ministry of Science and Technology, IndiaAgence Nationale de la RechercheMinistry of Earth SciencesNatural Sciences and Engineering Research Council of CanadaMinistry of Education, IndiaProject 211Vlaamse regeringAlexander von Humboldt-StiftungU.S. Department of Agriculture
KeywordsBiologyTaxonFungusBotany

Abstract

fetched live from OpenAlex

The Global Consortium for the Classification of Fungi and fungus-like taxa is an international initiative of more than 550 mycologists to develop an electronic structure for the classification of these organisms. The members of the Consortium originate from 55 countries/regions worldwide, from a wide range of disciplines, and include senior, mid-career and early-career mycologists and plant pathologists. The Consortium will publish a biannual update of the Outline of Fungi and fungus-like taxa, to act as an international scheme for other scientists. Notes on all newly published taxa at or above the level of species will be prepared and published online on the Outline of Fungi website (https://www.outlineoffungi.org/), and these will be finally published in the biannual edition of the Outline of Fungi and fungus-like taxa. Comments on recent important taxonomic opinions on controversial topics will be included in the biannual outline. For example, ‘to promote a more stable taxonomy in Fusarium given the divergences over its generic delimitation’, or ‘are there too many genera in the Boletales?’ and even more importantly, ‘what should be done with the tremendously diverse ‘dark fungal taxa?’ There are undeniable differences in mycologists’ perceptions and opinions regarding species classification as well as the establishment of new species. Given the pluralistic nature of fungal taxonomy and its implications for species concepts and the nature of species, this consortium aims to provide a platform to better refine and stabilise fungal classification, taking into consideration views from different parties. In the future, a confidential voting system will be set up to gauge the opinions of all mycologists in the Consortium on important topics. The results of such surveys will be presented to the International Commission on the Taxonomy of Fungi (ICTF) and the Nomenclature Committee for Fungi (NCF) with opinions and percentages of votes for and against. Criticisms based on scientific evidence with regards to nomenclature, classifications, and taxonomic concepts will be welcomed, and any recommendations on specific taxonomic issues will also be encouraged; however, we will encourage professionally and ethically responsible criticisms of others’ work. This biannual ongoing project will provide an outlet for advances in various topics of fungal classification, nomenclature, and taxonomic concepts and lead to a community-agreed classification scheme for the fungi and fungus-like taxa. Interested parties should contact the lead author if they would like to be involved in future outlines.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.873
Threshold uncertainty score0.190

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.256
Teacher spread0.239 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2023
Admission routes1
Has abstractyes

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