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Record W4393117142 · doi:10.1101/2024.03.20.585971

Higher prevalence of sacbrood virus in highbush blueberry pollination units

2024· preprint· en· W4393117142 on OpenAlexafffundabout
Alison McAfee, Sarah K. French, Nadejda Tsvetkov, Heather Higo, Julia Common, Stephen F. Pernal, Pierre Giovenazzo, Shelley E. Hoover, Ernesto Guzmán‐Novoa, R. William Currie, Patricia Wolf Veiga, Ida M. Conflitti, Mateus Pepinelli, Lan Tran, Amro Zayed, M. Marta Guarna, Leonard J. Foster

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicBerry genetics and cultivation research
Canadian institutionsUniversity of ManitobaUniversity of LethbridgeUniversity of GuelphUniversity of British ColumbiaAgriculture and Agri-Food CanadaYork UniversityUniversité LavalCanada's Michael Smith Genome Sciences Centre
FundersAgriculture and Agri-Food CanadaGenome British ColumbiaGovernment of CanadaGenome CanadaOntario GenomicsOntario Genomics Institute
KeywordsPollinationHorticultureBiologyBotanyPollen

Abstract

fetched live from OpenAlex

Abstract Highbush blueberry pollination depends on managed honey bees ( Apis mellifera ) for adequate fruit set; however, beekeepers have raised concerns about poor health of colonies after pollinating this crop. Postulated causes include agrochemical exposure, nutritional deficits, and interactions with parasites and pathogens, particularly Melisococcus plutonius (the causal agent of European foulbrood disease), but other pathogens could be involved. To broadly investigate common honey bee pathogens in relation to blueberry pollination, we sampled adult honey bees from colonies at time points corresponding to before (t1), during (t2), at the end (t3), and after (t4) highbush blueberry pollination in British Columbia (BC), Canada, across two years (2020 and 2021). Nine viruses as well as M. plutonius , Vairimorpha ceranae and V. apis (formerly Nosema ceranae and N. apis ) were detected by PCR and microscopy and compared among colonies located near and far from blueberry fields. We found a significant interactive effect of time and blueberry proximity on the multivariate pathogen community, mainly due to differences at t4 (corresponding to roughly six weeks after the beginning of the pollination period). Post-hoc comparisons of pathogens in near and far groups at t4 showed that detections of sacbrood virus (SBV), which was significantly higher in the exposed group, was the primary driver. The association of SBV with highbush blueberry pollination may be contributing to the health decline that beekeepers observe after pollinating this crop, likely in combination with other factors.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.777
Threshold uncertainty score0.636

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.032
GPT teacher head0.239
Teacher spread0.207 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes3
Has abstractyes

Explore more

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