MétaCan
Menu
Back to cohort
Record W4393167964 · doi:10.1016/j.jbc.2024.106360

Abstract 1624 Regulation of phosphatidylcholine synthesis at the inner nuclear membrane and nuclear lipid droplets

2024· article· en· W4393167964 on OpenAlexafffund
Neale D. Ridgway, Michael McPhee, Jason Foster, Steven Pelech, Graham Dellaire

Bibliographic record

VenueJournal of Biological Chemistry · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicNuclear Structure and Function
Canadian institutionsDalhousie University
FundersCanadian Institutes of Health Research
KeywordsPhosphatidylcholineInner membraneChemistryMembraneNuclear membraneLipid bilayerBiophysicsBiochemistryPhospholipidBiology

Abstract

fetched live from OpenAlex

The inner nuclear membrane (INM) can receive lipids by lateral diffusion from the outer nuclear membrane and endoplasmic reticulum (ER) at nuclear pores contacts.However, the INM and nucleoplasm also harbour phospholipid and triacylglycerol (TAG) biosynthetic enzymes, and assemble nuclear lipid droplets (nLDs) and lipid-associated PML structures (LAPS) from excess fatty acids.The CDP-choline pathway for synthesis of phosphatidylcholine, a major component of membranes and the surface monolayer of lipid droplets, terminates in the ER and Golgi apparatus but is regulated in the nucleus by the ratelimiting enzyme CTP:phosphocholine cytidylyltransferase α (CCTα).Changes in demand for phosphatidylcholine (PC) are relayed to CCTα via alterations in the structure and lipid composition of the INM and nLDs.An amphipathic helix in CCTα senses these compositional variations in the INM and nLDs and mediates enzyme translocation and activation.We treated hepatoma and osteosarcoma cells with oleate to identify factors that control the temporal association of CCTα with the INM and nLDs.The acute treatment of cells with oleate promoted translocation to the INM in 15-30 min and was accompanied by dephosphorylation of the serine-rich C-terminal P-domain.Oleate exposure for <2-3 h promoted the formation of nLDs and LAPS that gradually accumulated CCTα on their surface.The association of CCTα with nLDs and LAPS was proportional to available surface area and prevented by bulk phosphorylation of the P-domain.Blocking TAG synthesis with diacylglycerol acyltransferase inhibitors (iDGAT) trapped CCTα, Lipin1 and PML on the INM by a mechanism that was dependent on fatty acids but not DAG.Trapping CCTα on the INM of DGATi-treated cells increased its expression by inhibition of proteasomal degradation.The CCTα activators oleoyl alcohol and farnesol recapitulated these effect of oleate and DGATi.In contrast, CCTα on nLDs was not shielded against proteolytic degradation.We conclude that oleate provides the initial stimulus for CCTα association with the INM, followed by a shift to nLDs and LAPS as the surface monolayer increases due to TAG synthesis.Prolonging the acute phase of CCTα activation on the INM enhanced enzyme expression by blocking proteolytic degradation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0040.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.217
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

Explore more

Same venueJournal of Biological ChemistrySame topicNuclear Structure and FunctionFrench-language works237,207