MétaCan
Menu
Back to cohort
Record W4394465828 · doi:10.6084/m9.figshare.20440658

Construction of a High-Density Genetic Linkage Map and QTL Analysis of Fiber Yield Traits in Kenaf (<i>Hibiscus Cannabinus</i> L.) via SLAF-seq

2022· dataset· en· W4394465828 on OpenAlex
Meixia Chen, Yi Xu, Siyuan Chen, Chengkang Zhang, Hui Shi, Ting Liu, Jiantang Xu, Jianmin Qi, Liwu Zhang

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueFigshare · 2022
Typedataset
Languageen
FieldPharmacology, Toxicology and Pharmaceutics
TopicHibiscus Plant Research Studies
Canadian institutionsBC Children's HospitalUniversity of British Columbia
Fundersnot available
KeywordsKenafHibiscusQuantitative trait locusLinkage (software)Yield (engineering)Genetic linkageBiologyFiberHorticultureGeneticsGeneComposite materialMaterials science

Abstract

fetched live from OpenAlex

High-density genetic maps are vital for quantitative trait loci (QTL) mapping, genome assembly, and marker-assisted selection (MAS) in plants. Meanwhile, kenaf (<i>Hibiscus cannabinus</i> L.) is an important crop that produces raw fiber to many industries. However, both high-density genetic map construction and QTL identification have been limited in this crop due to insufficient molecular markers. Here, we constructed a high-density genetic linkage map in kenaf via specific-locus amplified fragment sequencing (SLAF-seq). An F<sub>7:8</sub> mapping population of 138 recombinant inbred lines was developed by crossing between Alian and Fuhong 992. In total, 220,484 high-quality SLAFs were detected, among which 52,832 were polymorphic; 4,167 polymorphic markers were then utilized to construct a genetic map. The assembled genetic map contained 18 linkage groups, spanning 1,952.68 cM with a mean distance of 0.47 cM among the adjacent markers. Phenotypic data from 10 fiber yield-related traits were used for QTL analysis, and a total of 85 QTLs were detected for 10 traits. We were able to construct the densest linkage map yet reported in kenaf and our findings will aid in further QTL mapping, genome comparisons, and MAS breeding in kenaf.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.525
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.5260.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.079
GPT teacher head0.375
Teacher spread0.296 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it