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Record W4394475330 · doi:10.6084/m9.figshare.19795435

Construction of an evenly-distributed genetic map using contig-tag-SNPs for quantitative trait loci (QTL) analysis of fiber-related traits in kenaf (<i>Hibiscus cannabinus</i> L.)

2022· dataset· en· W4394475330 on OpenAlex
Yi Xu, Xuebei Wan, Siyuan Chen, Ting Liu, Jianmin Qi, Jiantang Xu, Liwu Zhang

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueFigshare · 2022
Typedataset
Languageen
FieldPharmacology, Toxicology and Pharmaceutics
TopicHibiscus Plant Research Studies
Canadian institutionsBC Children's HospitalUniversity of British Columbia
Fundersnot available
KeywordsKenafQuantitative trait locusHibiscusContigBiologyTraitGenetic analysisFiberGeneticsBotanyComposite materialComputer scienceGeneGenomeMaterials science

Abstract

fetched live from OpenAlex

Kenaf is one of the most important natural fiber crops worldwide, which aims at harvesting bast fiber. Mining QTL loci of fiber yield and quality traits will facilitate fiber improvement and molecular marker-assisted breeding in kenaf. In this study, Fuhong 952 and Zanyin No. 1 were used as parents to construct two mapping populations, F<sub>2</sub> and F<sub>2:3</sub>, and an evenly distributed genetic linkage map was constructed by re-sequencing. The map contains 2512 contig-tag-SNP markers, and 18 linkage groups with a total length of 1287.63 cM and an average distance of 0.51 cM. Totally, 32 and 28 QTLs were detected in the F<sub>2</sub> and F<sub>2:3</sub> populations, respectively. Through Blast searching against the reference genome using the sequences of flanking molecular markers linked to QTLs, 374 candidate genes related to cell wall formation and photoperiod regulating flowering were found in these loci, including cellulose synthase-like genes, MYB genes, and Agamous-like genes. These findings could lay a foundation for the improvement of fiber-related traits and gene cloning in kenaf.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.002
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Insufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.320
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.002
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0010.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.3200.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.150
GPT teacher head0.444
Teacher spread0.295 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it