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Record W4394772222 · doi:10.5376/tgmb.2024.14.0003

Accelerating the Process of Tree Breeding: A Review and Progress of GWAS Applications in Forest Trees

2024· review· en· W4394772222 on OpenAlex
Chuchu Liu, Yuan Liu

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueTree Genetics and Molecular Breeding · 2024
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic and phenotypic traits in livestock
Canadian institutionsnot available
Fundersnot available
KeywordsGenome-wide association studyTree breedingBiologyTraitGenomicsTree (set theory)Genetic associationGenetic diversityComputational biologyBiotechnologyGenomeComputer scienceGeneticsEcologySingle-nucleotide polymorphismMedicinePopulationMathematicsGeneGenotype

Abstract

fetched live from OpenAlex

This study reviews and prospects the application of Genome-wide Association Studies (GWAS) in forest tree breeding. With the rapid development of molecular biology and genomics, GWAS has become an essential tool for deciphering the relationship between genetic variation and trait expression in trees. This research introduces the basic principles and methods of GWAS technology and discusses its successful application in the field of plant breeding, showcasing the potential of GWAS in identifying genetic markers related to important agronomic traits such as crop yield, quality, and disease resistance. The study focuses on the special considerations and challenges of GWAS in tree breeding, including the long lifespan of trees, their large genomes, and genetic diversity, and elucidates the application of GWAS in identifying genetic markers related to important traits in trees, using actual case studies. The application of GWAS in tree breeding not only improves the efficiency and accuracy of breeding but also provides new strategies and methods for protecting genetic resources and adapting to environmental changes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.922
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.327
Teacher spread0.293 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it