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Record W4394784791 · doi:10.1111/mec.17353

Global assessment of effective population sizes: Consistent taxonomic differences in meeting the 50/500 rule

2024· article· en· W4394784791 on OpenAlexafffund
Shannon H. Clarke, Elizabeth R. Lawrence, Jean‐Michel Matte, Brian K. Gallagher, Sarah J. Salisbury, Sozos Michaelides, Ramela Arax Koumrouyan, Daniel E. Ruzzante, James W. A. Grant, Dylan J. Fraser

Bibliographic record

VenueMolecular Ecology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsDalhousie UniversityConcordia University
FundersNatural Sciences and Engineering Research Council of CanadaResearch Committee, Aristotle University of ThessalonikiGroupe de recherche interuniversitaire en limnologieConcordia University
KeywordsBiologyIUCN Red ListTaxonPopulationConservation statusMammalInbreedingEcologyTaxonomic rankGene flowEffective population sizeGenetic variationHabitatDemography

Abstract

fetched live from OpenAlex

Abstract Effective population size ( N e ) is a particularly useful metric for conservation as it affects genetic drift, inbreeding and adaptive potential within populations. Current guidelines recommend a minimum N e of 50 and 500 to avoid short‐term inbreeding and to preserve long‐term adaptive potential respectively. However, the extent to which wild populations reach these thresholds globally has not been investigated, nor has the relationship between N e and human activities. Through a quantitative review, we generated a dataset with 4610 georeferenced N e estimates from 3829 populations, extracted from 723 articles. These data show that certain taxonomic groups are less likely to meet 50/500 thresholds and are disproportionately impacted by human activities; plant, mammal and amphibian populations had a <54% probability of reaching = 50 and a <9% probability of reaching = 500. Populations listed as being of conservation concern according to the IUCN Red List had a smaller median than unlisted populations, and this was consistent across all taxonomic groups. was reduced in areas with a greater Global Human Footprint, especially for amphibians, birds and mammals, however relationships varied between taxa. We also highlight several considerations for future works, including the role that gene flow and subpopulation structure plays in the estimation of in wild populations, and the need for finer‐scale taxonomic analyses. Our findings provide guidance for more specific thresholds based on N e and help prioritise assessment of populations from taxa most at risk of failing to meet conservation thresholds.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.031
metaresearch head score (Gemma)0.113
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.031
Threshold uncertainty score0.167

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0310.113
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0080.008
Science and technology studies0.0000.002
Scholarly communication0.0030.003
Open science0.0020.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.255
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations60
Published2024
Admission routes2
Has abstractyes

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