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Record W4394852837 · doi:10.1101/2024.04.12.589271

Genetic screen to test microRNA function in peripheral glia morphology

2024· preprint· en· W4394852837 on OpenAlexafffund
Sravya Paluri, Vanessa J. Auld

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicroRNA in disease regulation
Canadian institutionsUniversity of British Columbia
FundersCanadian Institutes of Health Research
KeywordsmicroRNABiologyGene knockdownCell biologyCentral nervous systemSpongeNeuroscienceGeneGenetics

Abstract

fetched live from OpenAlex

Abstract Glial cells perform many functions in the nervous system, including maintaining the blood-brain/nerve barriers and structurally supporting axons. While their functions are well-characterized, the complex molecular mechanisms important for their development are less known. Here, we investigated whether microRNA-mediated post-transcriptional regulation is involved during glial development, ensheathment and blood-nerve-barrier formation in Drosophila . In this study, we systematically knocked down 120 different microRNAs by competitive inhibition using microRNA-sponges and analyzed peripheral glial morphology. Knockdown of miRNA-125 in the blood-nerve barrier-forming glia (subperineurial glia) resulted in the most penetrant morphological defects. Since microRNA-125 is co-transcribed with miRNAs-let7 and −100 in a genetic cluster, our further verification for subperineurial glia function included miRNA-125 plus all other members of this cluster. However, the loss of each individual gene and the entire cluster did not lead to any morphological defects in the subperineurial glia. To test the efficiency of the microRNA sponge approach in subperineurial glia, we expressed a sponge targeting a microRNA established to be vital for blood-brain barrier formation (microRNA-285) and found no defects in brain lobes and peripheral nerves. Given that a scrambled-sponge control also generated morphological defects, this suggests that using miRNA sponge lines may not be an effective approach to study miRNA function in Drosophila peripheral glia.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.217
Teacher spread0.209 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

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