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Record W4394957535 · doi:10.5376/cge.2024.12.0007

A New Perspective on Revealing Tumor Heterogeneity through Single Cell RNA Sequencing

2024· article· en· W4394957535 on OpenAlexvenueno aff
Tao Chen

Bibliographic record

VenueCancer Genetics and Epigenetics · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer Genomics and Diagnostics
Canadian institutionsnot available
Fundersnot available
KeywordsComputational biologyPerspective (graphical)Tumor heterogeneityRNABiologyGeneticsComputer scienceGeneArtificial intelligenceCancer

Abstract

fetched live from OpenAlex

This review paper mainly explores the application and prospects of single-cell RNA sequencing technology in the study of tumor heterogeneity. As an important concept in the field of oncology, tumor heterogeneity reveals the diversity and complexity of cells within a tumor, which has significant implications for tumor initiation, progression, treatment, and prognosis. However, traditional research methods have limitations in elucidating tumor heterogeneity. In recent years, the emergence of single-cell RNA sequencing technology has brought new breakthroughs to the study of tumor heterogeneity. This paper first introduces the concept and importance of tumor heterogeneity, then outlines the development and principles of single-cell RNA sequencing technology. Subsequently, it focuses on the specific applications of single-cell RNA sequencing in tumor heterogeneity research, including the identification of intra-tumoral cell subpopulations, the analysis of gene expression differences and regulatory networks, and the investigation of interactions among tumor cells. Finally, the contributions of single-cell RNA sequencing in tumor heterogeneity research are summarized, and future research directions are prospected.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0010.004
Scholarly communication0.0020.006
Open science0.0010.001
Research integrity0.0030.005
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.290
Teacher spread0.265 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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