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Record W4395252905 · doi:10.15468/dl.4ugwqb

Occurrence Download

2023· dataset· en· W4395252905 on OpenAlexaboutno aff

Bibliographic record

VenueGlobal Biodiversity Information Facility · 2023
Typedataset
Languageen
FieldEnvironmental Science
TopicEnvironmental DNA in Biodiversity Studies
Canadian institutionsnot available
Fundersnot available
KeywordsDownloadComputer scienceWorld Wide Web

Abstract

fetched live from OpenAlex

A dataset containing 334119841 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is one of (Eunicidae, Histriobdellidae, Paraonidae, Diaptomidae, Ptilocercidae, Homopus Duméril & Bibron, 1834, Rousettus Gray, 1821, Potos É.Geoffroy Saint-Hilaire & F.G.Cuvier, 1795, Otolemur Coquerel, 1859, Galago É.Geoffroy Saint-Hilaire, 1796, Sinodiaptomus Kiefer, 1932, Anathana Lyon, 1913, Dendrogale Gray, 1848, Distoechurus Peters, 1874, Pteropus Brisson, 1762, Platycleis Fieber, 1853, Petauroides Thomas, 1888, Heterohyrax Gray, 1868, Ailurops Wagler, 1830, Decticus Serville, 1831, Anomalurus Waterhouse, 1843, Cynocephalus Boddaert, 1768, Proechimys J.A.Allen, 1899, Trichys Günther, 1877, Galagoides A.Smith, 1833, Leptodiaptomus Light, 1938, Spilocuscus Gray, 1861, Strigocuscus Gray, 1861, Idiurus Matschie, 1894, Psammobates Fitzinger, 1835, Manouria Gray, 1854, Laonastes Jenkins, Kilpatrick, Robinson & Timmins, 2005, Juscelinomys Moojen, 1965, Dactylopsila Gray, 1858, Tarsipes Gervais & Verreaux, 1842, Wyulda Alexander, 1918, Dorcopsulus Matschie, 1916, Georychus Illiger, 1811, Heliophobius Peters, 1846, Octodon Bennett, 1832, Octomys Thomas, 1920, Tympanoctomys Yepes, 1941, Spalacopus Wagler, 1832, Propithecus Bennett, 1832, Eulemur Simons & Rumpler, 1988, Hapalemur I.Geoffroy Saint-Hilaire, 1851, Varecia Gray, 1863, Arctocebus Gray, 1863, Loris É.Geoffroy Saint-Hilaire, 1796, Nycticebus É.Geoffroy Saint-Hilaire, 1812, Perodicticus Bennett, 1831, Myoprocta Thomas, 1903, Cuniculus Brisson, 1762, Chinchilla Bennett, 1829, Dinomys Peters, 1873, Dactylomys I.Geoffroy Saint-Hilaire, 1838, Kannabateomys Jentink, 1891, Echimys G.Cuvier, 1809, Isothrix Wagner, 1845, Makalata Husson, 1978, Carterodon Waterhouse, 1848, Clyomys Thomas, 1916, Mesomys Wagner, 1845, Thrichomys Trouessart, 1880, Eidolon Rafinesque, 1815, Tonatia Gray, 1827, Allactaga F.Cuvier, 1837, Graphiurus Smuts, 1832, Bassaricyon J.A.Allen, 1876, Arborimus Taylor, 1915, Hesperodiaptomus Light, 1938, Diaptomus Westwood, 1836, Eudiaptomus Kiefer, 1932, Orchelimum Serville, 1838, Psammonyx Döderlein, 1892, Barbitistes Charpentier, 1825, Lipotactes Brunner von Wattenwyl, 1898, Phaneroptera Serville, 1831, Isophya Brunner von Wattenwyl, 1878, Cymatomera Schaum, 1853, Anabrus Haldeman, 1852, Indotestudo Lindholm, 1929, Schistomeringos Jumars, 1974, Histriobdella Van Beneden, 1858, Nephtys Cuvier, 1817, Triclis Loew, 1851, Lutzia Theobald, 1903, Elysia pruvotae Risbec, 1953, Lindsaya Flynn, Jacobs & Umer Cheema, 1986, Glabratella Dorreen, 1948, Talparia Troschel, 1863, Damonia Robineau-Desvoidy, 1848, Onychodiaptomus Light, 1939, Mixodiaptomus Kiefer, 1932, Nordodiaptomus Wilson M.S., 1951, Ctenodactylus Gray, 1830, Pectinator Blyth, 1856, Avahi Jourdan, 1834, Indri É.Geoffroy Saint-Hilaire & G.Cuvier, 1796, Kerodon F.Cuvier, 1825, Galeopterus Thomas, 1908, Cricosaura Gundlach & Peters, 1863, Chiropodomys Peters, 1868, Colomys Thomas & Wroughton, 1907, Hapalomys Blyth, 1859, Hyomys Thomas, 1904, Lophuromys Peters, 1874, Platacanthomys Blyth, 1859, Petromyscus Thomas, 1926, Deomys Thomas, 1888, Phodopus Miller, 1910, Cannomys Thomas, 1915, Tachyoryctes Rüppell, 1835, Beamys Thomas, 1909, Cricetomys Waterhouse, 1840, Brachytarsomys Günther, 1875, Eliurus Milne-Edwards, 1885, Gymnuromys Forsyth Major, 1896, Hypogeomys A.Grandidier, 1869, Macrotarsomys Milne-Edwards & G.Grandidier, 1898, Nesomys Peters, 1870, Chionomys Miller, 1908, Prometheomys Satunin, 1901, Akodon Meyen, 1833, Bibimys Massoia, 1979, Blarinomys Thomas, 1896, Calomys Waterhouse, 1837, Chelemys Thomas, 1903, Delomys Thomas, 1917, Euneomys Coues, 1874, Geoxus Thomas, 1919, Irenomys Thomas, 1919, Lenoxus Thomas, 1909, Neacomys Thomas, 1900, Neotomys Thomas, 1894, Oecomys Thomas, 1906, Oligoryzomys Bangs, 1900, Ototylomys Merriam, 1901, Rhipidomys Tschudi, 1845, Scapteromys Waterhouse, 1837, Scolomys Anthony, 1924, Thalpomys Thomas, 1916, Thomasomys Coues, 1884, Tylomys Peters, 1866, Wiedomys Hershkovitz, 1959, Wilfredomys Avila-Pires, 1960, Sylvilagus obscurus Chapman, Cramer, Deppenaar & Robinson, 1992, Ochotona hyperborea (Pallas, 1811), Lepus insularis W.Bryant, 1891, Sylvilagus palustris (Bachman, 1837), Macropus eugenii (Desmarest, 1817), Ochotona koslowi (Büchner, 1894), Ochotona gloveri Thomas, 1922, Sylvilagus graysoni (J.A.Allen, 1877), Sylvilagus brasiliensis (Linnaeus, 1758), Lepus europaeus Pallas, 1778, Lepus alleni Mearns, 1890, Sylvilagus robustus (Bailey, 1905), Sylvilagus varynaensis Durant & Guevara, 2001, Ochotona nigritia Gong et al., 2000, Ochotona huangensis (Matschie, 1908), Sylvilagus bachmani (Waterhouse, 1839), Lepus coreanus Thomas, 1892, Lepus comus Allen, 1927, Ochotona thomasi Argyropulo, 1948, Ochotona thibetana (A.Milne-Edwards, 1871), Macropus parma Waterhouse, 1846, Macropus robustus Gould, 1840, Macropus rufus (Desmarest, 1822), Macropus dorsalis (Gray, 1837), Macropus greyi Waterhouse, 1846, Ochotona roylii (Ogilby, 1839), Ochotona cansus Lyon, 1907, Ochotona curzoniae (Hodgson, 1858), Ochotona dauurica (Pallas, 1776), Ochotona gaoligongensis Wang, Gong & Duan, 1988, Ochotona himalayana Feng, 1973, Ochotona iliensis Li & Ma, 1986, Vampyrodes caraccioli (Thomas, 1889), Platyrrhinus brachycephalus (Rouk & Carter, 1972), Platyrrhinus chocoensis Alberico & Velasco, 1991, Thoopterus nigrescens (Gray, 1870), Ceriodaphnia megops Sars, 1862, Ctenomys haigi Thomas, 1917, Ctenomys knighti Thomas, 1919, Otopteropus cartilagonodus Kock, 1969, Casinycteris ophiodon (Pohle, 1943), Scotonycteris zenkeri Matschie, 1894, Rousettus obliviosus Kock, 1978, Dasyprocta azarae Lichtenstein, 1823, Enchisthenes hartii (Thomas, 1892), Sturnira aratathomasi Peterson & Tamsitt, 1968, Sturnira bidens (Thomas, 1915), Sturnira bogotensis Shamel, 1927, Sturnira erythromos (Tschudi, 1844), Sturnira lilium (E.Geoffroy, 1810), Sturnira ludovici Anthony, 1924, Sturnira luisi Davis, 1980, Sturnira magna de la Torre, 1966, Sturnira mordax (Goodwin, 1938), Sturnira nana Gardner & O'Neill, 1971, Sturnira thomasi de la Torre & Schwartz, 1966, Sturnira tildae de la Torre, 1959, Lagorchestes conspicillatus Gould, 1841, Lagorchestes asomatus Finlayson, 1943, Lagorchestes hirsutus Gould, 1844, Prosciurillus abstrusus Moore, 1958, Prosciurillus leucomus (Müller & Schlegel, 1844), Hystrix javanica (F.Cuvier, 1823), Dasyprocta fuliginosa Wagler, 1832, Setonix brachyurus (Quoy & Gaimard, 1830), Abrocoma cinerea Thomas, 1919, Sphiggurus villosus (F.Cuvier, 1823), Phyllops falcatus (Gray, 1839), Pygoderma bilabiatum (Wagner, 1843), Abrocoma bennettii Waterhouse, 1837, Bathyergus suillus (Schreber, 1782), Cryptomys bocagei (de Winton, 1897), Hylobates lar (Linnaeus, 1771), Styloctenium wallacei (Gray, 1866), Alona guttata Sars, 1862, Sphaerias blanfordi (Thomas, 1891), Cryptomys damarensis (Ogilby, 1838), Sundasciurus juvencus (Thomas, 1908), Sundasciurus hoogstraali (Sanborn, 1952), Ctenomys fulvus Philippi, 1860, Ctenomys latro Thomas, 1918, Sundasciurus hippurus (I.Geoffroy Saint-Hilaire, 1831), Bettongia penicillata Gray, 1837, Caloprymnus campestris (Gould, 1843), Bettongia leseuri Gray, 1837, Bettongia gaimardi (Desmarest, 1822), Aepyprymnus rufescens (Gray, 1837), Phascolarctos cinereus (Goldfuss, 1817), Thylogale billardierii (Desmarest, 1822), Petrogale assimilis Ramsay, 1877, Petrogale penicillata (Gray, 1827), Papio hamadryas (Linnaeus, 1758), Cercopithecus sclateri Pocock, 1904, Lophocebus albigena (Gray, 1850), Cercopithecus pogonias Bennett, 1833, Cercopithecus wolfi Meyer, 1891, Allochrocebus solatus (Harrison, 1988), Presbytis frontata (Müller, 1838), Colobus guereza Rüppell, 1835, Colobus polykomos (Zimmermann, 1780), Colobus satanas Waterhouse, 1838, Simias concolor Miller, 1903, Presbytis potenziani (Bonaparte, 1856), Sciurocheirus alleni (Waterhouse, 1838), Semnopithecus vetulus (Erxleben, 1777), Trachypithecus francoisi (de Pousargues, 1898), Trachypithecus auratus (É.Geoffroy Saint-Hilaire, 1812), Rhinopithecus roxellana (A.Milne-Edwards, 1870), Rhinopithecus bieti A.Milne-Edwards, 1897, Sinodiaptomus sarsi (Rylov, 1923), Urocitellus townsendii (Bachman, 1839), Anathana ellioti (Waterhouse, 1850), Dendrogale melanura (Thomas, 1892), Dendrogale murina (Schlegel & Müller, 1843), Sundasciurus jentinki (Thomas, 1887), Porcellio scaber Latreille, 1804, Ctenomys lewisi Thomas, 1926, Ctenomys magellanicus Bennett, 1836, Ctenomys conoveri Osgood, 1946, Ctenomys dorsalis Thomas, 1900, Acrocodia indica (Desmarest, 1819), Tapirus pinchaque (Roulin, 1829), Equus grevyi Oustalet, 1882, Equus zebra Linnaeus, 1758, Rhinoceros unicornis Linnaeus, 1758, Tapirella bairdii (Gill, 1865), Nanger dama (Pallas, 1766), Gazella dorcas (Linnaeus, 1758), Gazella gazella (Pallas, 1766), Nanger granti (Brooke, 1872), Gazella leptoceros (F.Cuvier, 1842), Eudorcas rufifrons (Gray, 1846), Eudorcas rufina (Thomas, 1894), Gazella saudiya Carruthers & Schwarz, 1935, Nanger soemmerringii (Cretzschmar, 1828), Gazella spekei Blyth, 1863, Gazella subgutturosa (Güldenstaedt, 1780), Eudorcas thomsonii (Günther, 1884), Litocranius walleri (Brooke, 1879), Bradypus torquatus Illiger, 1811, Bradypus tridactylus Linnaeus, 1758, Acrobates pygmaeus (Shaw, 1793), Distoechurus pennatus Peters, 1874, Hippocamelus antisensis (d'Orbigny, 1834), Orthogeomys dariensis (Goldman, 1912), Pteropus rodricensis Dobson, 1878, Orthogeomys cavator (Bangs, 1902), Capreolus pygargus (Pallas, 1771), Pudu puda (Molina, 1782), Orthogeomys hispidus (Le Conte, 1852), Pudu mephistophiles (de Winton, 1896), Mazama rufina (Bourcier & Pucheran, 1852), Ozotoceros bezoarticus (Linnaeus, 1758), Mazama gouazoubira G.Fischer, Mazama nana (Hensel, 1872), Mazama bricenii Thomas, 1908, Mazama chunyi Hershkovitz, 1959, Orthogeomys grandis (Thomas, 1893), Orthogeomys heterodus (Peters, 1865), Mazama americana (Erxleben, 1777), Orthogeomys matagalpae (J.A.Allen, 191

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.645
Threshold uncertainty score0.921

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.007
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0080.012
Science and technology studies0.0010.000
Scholarly communication0.0050.004
Open science0.0030.004
Research integrity0.0030.002
Insufficient payload (model declined to judge)0.3550.476

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.207
Teacher spread0.192 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2023
Admission routes1
Has abstractyes

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Same venueGlobal Biodiversity Information Facility→Same topicEnvironmental DNA in Biodiversity Studies→French-language works237,207→