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Estimating indoor airborne concentrations of SARS-CoV-2 RNA using quantitative filter forensics

2024· article· en· W4396835421 on OpenAlexafffund
Zoe Hoskin, Jeffrey A. Siegel, Sarah R. Haines

Bibliographic record

VenueBuilding and Environment · 2024
Typearticle
Languageen
FieldMedicine
TopicInfection Control and Ventilation
Canadian institutionsPublic Health OntarioUniversity of Toronto
FundersNatural Sciences and Engineering Research Council of CanadaGovernment of Ontario
KeywordsRNARNA extractionSampling (signal processing)Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)BiologyCoronavirus disease 2019 (COVID-19)Environmental scienceFilter (signal processing)MedicineComputer scienceGeneGenetics

Abstract

fetched live from OpenAlex

This investigation used portable air cleaners (PACs) and quantitative filter forensics (QFF) to assess week-long average airborne concentrations of SARS-CoV-2 RNA in homes occupied with COVID-symptomatic individuals, classrooms, and dining locations throughout Toronto, Canada. PACs were deployed for one week each, and dust from filters was collected via vacuuming. SARS-CoV-2 RNA from filter dust was quantified using reverse transcription-polymerase chain reaction (RT-PCR). RNA quantities and PAC metadata were used to estimate airborne concentrations of SARS-CoV-2 RNA. The highest concentrations of RNA were found in isolation rooms (median concentration=8.68 RNA copies/m3). Classrooms had lower concentrations during summer than in fall and winter (median concentration of sampling weeks when RNA was present = 0.02 RNA copies/m3 and 0.11 RNA copies/m3, respectively), which may be attributed to differences in classroom occupancy among other factors. Limitations include unknown recovery efficiency of RNA from filters and the dynamics of concentrations due to the temporal averaging provided by QFF. Our results are consistent with previous research highlighting the effectiveness of isolation in preventing distribution of high concentrations of SARS-CoV-2 RNA throughout a home. Overall, QFF is a beneficial tool for environmental sampling of respiratory airborne virus RNA such as SARS-CoV-2 RNA, that can be implemented for long-term sampling in mixed-occupancy environments.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.053
GPT teacher head0.324
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations2
Published2024
Admission routes2
Has abstractno

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