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Record W4399012629 · doi:10.1101/2024.05.23.595635

ATP and glutamate coordinate contractions in the freshwater sponge <i>Ephydatia muelleri</i>

2024· preprint· en· W4399012629 on OpenAlexaff
Vanessa Ho, Greg G. Goss, Sally P. Leys

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMarine Sponges and Natural Products
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsSpongeBiologyGlutamate receptorChemistryZoologyBiochemistryPaleontology

Abstract

fetched live from OpenAlex

Abstract Sponges (phylum Porifera ) are an early diverging animal lineage that lacks both conventional nervous and muscular systems, and yet they are able to produce coordinated whole-body contractions in response to disturbances. Little is known about the underlying signaling mechanisms in coordinating such responses. Previous studies demonstrated that sponges respond specifically to neuroactive chemicals such as L-glutamate and γ-amino-butyric acid (GABA), which trigger and prevent contractions respectively. Genes for purinergic P2X-like receptors are present in several sponge genomes, leading us to ask whether ATP works with glutamate to coordinate contractions in sponges as it does in other animal nervous systems. Using pharmacological approaches on the freshwater sponge Ephydatia muelleri , we show that ATP is involved in coordinating contractions. Bath applications of ATP cause a rapid, sustained expansion of the excurrent canals in a dose-dependent manner. Complete contractions occur when ATP is added in the presence of apyrase, an enzyme that hydrolyzes ATP. Applying ADP, the first metabolic product of ATP hydrolysis, triggers complete contractions, whereas AMP, the subsequent metabolite, does not trigger a response. Blocking ATP from binding and activating P2X receptors with pyridoxalphosphate-6-azophenyl-2’,4’-disulfonic acid (PPADS) prevents both glutamate- and ATP-triggered contractions, suggesting that ATP works downstream of glutamate. Bioinformatic analysis revealed two P2X receptor sequences, one which groups with other vertebrate P2X receptors. Altogether, our results confirm that purinergic signaling by ATP is involved in coordinating contractions in the freshwater sponge suggesting a role of ATP-mediated signaling that predates the evolution of the nervous system and multicellularity in animals. Summary statement Nerveless sponges coordinate a sneeze-like reflex using glutamate and ATP signaling to expel water from the body.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.217
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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