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Record W4399245865 · doi:10.5376/cmb.2024.14.0005

Role of Proteomics in Unraveling Bacterial Virulence in Rice

2024· article· en· W4399245865 on OpenAlex
Jianquan Li

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueComputational Molecular Biology · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Pathogenic Bacteria Studies
Canadian institutionsnot available
Fundersnot available
KeywordsVirulenceProteomicsBiologyMicrobiologyComputational biologyGeneticsGene

Abstract

fetched live from OpenAlex

Rice stands as a pivotal global staple, underpinning the sustenance of billions. However, its production is critically hampered by bacterial diseases, which pose substantial threats to food security. This systematic review delves into the vital role of proteomics in understanding bacterial virulence and its interactions with rice, highlighting the indispensable need for advanced proteomic techniques to address these challenges. Employing methods such as mass spectrometry and two-dimensional electrophoresis, this review consolidates key findings including the identification of specific virulence factors and detailed insights into host-pathogen dynamics. These proteomic methodologies have illuminated the pathogenic processes affecting rice, paving the way for targeted interventions. The implications of these findings are profound, offering potential strategies for the development of disease-resistant rice varieties and thus enhancing agricultural productivity. However, the field faces ongoing challenges such as the complexity of proteomic data and the need for enhanced sensitivity and specificity in detecting virulence factors. Future directions include refining proteomic techniques and integrating multi-omics approaches to foster a holistic understanding of bacterial pathogenesis in rice. This review underscores the transformative potential of proteomics in revolutionizing rice pathology for improved crop resilience and yield.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.937
Threshold uncertainty score0.149

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.236
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it