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Record W4399245865 · doi:10.5376/cmb.2024.14.0005

Role of Proteomics in Unraveling Bacterial Virulence in Rice

2024· article· en· W4399245865 on OpenAlexvenueno aff
Jianquan Li

Bibliographic record

VenueComputational Molecular Biology · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Pathogenic Bacteria Studies
Canadian institutionsnot available
Fundersnot available
KeywordsVirulenceProteomicsBiologyMicrobiologyComputational biologyGeneticsGene

Abstract

fetched live from OpenAlex

Rice stands as a pivotal global staple, underpinning the sustenance of billions. However, its production is critically hampered by bacterial diseases, which pose substantial threats to food security. This systematic review delves into the vital role of proteomics in understanding bacterial virulence and its interactions with rice, highlighting the indispensable need for advanced proteomic techniques to address these challenges. Employing methods such as mass spectrometry and two-dimensional electrophoresis, this review consolidates key findings including the identification of specific virulence factors and detailed insights into host-pathogen dynamics. These proteomic methodologies have illuminated the pathogenic processes affecting rice, paving the way for targeted interventions. The implications of these findings are profound, offering potential strategies for the development of disease-resistant rice varieties and thus enhancing agricultural productivity. However, the field faces ongoing challenges such as the complexity of proteomic data and the need for enhanced sensitivity and specificity in detecting virulence factors. Future directions include refining proteomic techniques and integrating multi-omics approaches to foster a holistic understanding of bacterial pathogenesis in rice. This review underscores the transformative potential of proteomics in revolutionizing rice pathology for improved crop resilience and yield.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0000.001
Scholarly communication0.0020.002
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.236
Teacher spread0.226 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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Same venueComputational Molecular BiologySame topicPlant Pathogenic Bacteria StudiesFrench-language works237,207