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Record W4399340151 · doi:10.1038/s41591-024-03039-x

Proteomic analysis of cardiorespiratory fitness for prediction of mortality and multisystem disease risks

2024· article· en· W4399340151 on OpenAlexfundno aff
Andrew Perry, Eric Farber‐Eger, Tomas I. Gonzales, Toshiko Tanaka, Jeremy Robbins, Venkatesh L. Murthy, Lindsey K. Stolze, Shilin Zhao, Shi Huang, Laura A. Colangelo, Shuliang Deng, Lifang Hou, Donald M. Lloyd‐Jones, Keenan A. Walker, Luigi Ferrucci, Eleanor L. Watts, Jacob L. Barber, Prashant Rao, Michael Mi, Kelley Pettee Gabriel, Bjoern Hornikel, Stephen Sidney, Nicholas Houstis, Gregory D. Lewis, Gabrielle Y. Liu, Bharat Thyagarajan, Sadiya S. Khan, Bina Choi, George R. Washko, Ravi Kalhan, Nicholas J. Wareham, Claude Bouchard, Mark A. Sarzynski, Robert E. Gerszten, Søren Brage, Quinn S. Wells, Matthew Nayor, Ravi V. Shah

Bibliographic record

VenueNature Medicine · 2024
Typearticle
Languageen
FieldMedicine
TopicCardiovascular and exercise physiology
Canadian institutionsnot available
FundersEunice Kennedy Shriver National Institute of Child Health and Human DevelopmentNIHR Cambridge Biomedical Research CentreKaiser Foundation Research InstituteSchool of Medicine, University of Alabama at BirminghamNational Institutes of HealthU.S. National Library of MedicineSchool of Medicine, Boston UniversityNational Heart, Lung, and Blood InstituteNorthwestern UniversityNational Institute of Nursing ResearchNational Institute for Health and Care ResearchRyerson UniversityNational Institute of Environmental Health SciencesUniversity of MinnesotaNational Institute of Allergy and Infectious DiseasesMedical Research CouncilAmerican Heart Association
KeywordsCardiorespiratory fitnessMedicineBiobankFramingham Risk ScoreDiseaseCohortHazard ratioConfidence intervalPopulationInternal medicineBioinformaticsCohort studyBiologyEnvironmental health

Abstract

fetched live from OpenAlex

Despite the wide effects of cardiorespiratory fitness (CRF) on metabolic, cardiovascular, pulmonary and neurological health, challenges in the feasibility and reproducibility of CRF measurements have impeded its use for clinical decision-making. Here we link proteomic profiles to CRF in 14,145 individuals across four international cohorts with diverse CRF ascertainment methods to establish, validate and characterize a proteomic CRF score. In a cohort of around 22,000 individuals in the UK Biobank, a proteomic CRF score was associated with a reduced risk of all-cause mortality (unadjusted hazard ratio 0.50 (95% confidence interval 0.48-0.52) per 1 s.d. increase). The proteomic CRF score was also associated with multisystem disease risk and provided risk reclassification and discrimination beyond clinical risk factors, as well as modulating high polygenic risk of certain diseases. Finally, we observed dynamicity of the proteomic CRF score in individuals who undertook a 20-week exercise training program and an association of the score with the degree of the effect of training on CRF, suggesting potential use of the score for personalization of exercise recommendations. These results indicate that population-based proteomics provides biologically relevant molecular readouts of CRF that are additive to genetic risk, potentially modifiable and clinically translatable.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.472
Threshold uncertainty score0.357

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.362
Teacher spread0.320 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations36
Published2024
Admission routes1
Has abstractyes

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