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Record W4399463410 · doi:10.1002/yea.3966

<i>Spathaspora marinasilvae</i> sp. nov., a xylose‐fermenting yeast isolated from galleries of passalid beetles and rotting wood in the Amazonian rainforest biome

2024· article· en· W4399463410 on OpenAlex
Katharina O. Barros, Thiago Mafra Batista, Rafaela C. C. Soares, Mariana Lopes, Flávia B. M. Alvarenga, Gisele F. L. Souza, Maxwel Adriano Abegg, Ana Raquel O. Santos, Aristóteles Goés‐Neto, Heron Oliveira Hilário, Rennan G. Moreira, Glória Regina Franco, Marc‐André Lachance, Carlos A. Rosa

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

affAt least one author lists a Canadian institution in the pinned OpenAlex snapshot.

Bibliographic record

VenueYeast · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicYeasts and Rust Fungi Studies
Canadian institutionsWestern University
FundersConselho Nacional de Desenvolvimento Científico e Tecnológico
KeywordsBiologyInternal transcribed spacerAmazonianGenusBotanyRibosomal RNAGeneticsGeneAmazon rainforestEcology

Abstract

fetched live from OpenAlex

Abstract Four yeast isolates were obtained from rotting wood and galleries of passalid beetles collected in different sites of the Brazilian Amazonian Rainforest in Brazil. This yeast produces unconjugated allantoid asci each with a single elongated ascospore with curved ends. Sequence analysis of the internal transcribed spacer‐5.8 S region and the D1/D2 domains of the large subunit ribosomal RNA (rRNA) gene showed that the isolates represent a novel species of the genus Spathaspora . The novel species is phylogenetically related to a subclade containing Spathaspora arborariae and Spathaspora suhii . Phylogenomic analysis based on 1884 single‐copy orthologs for a set of Spathaspora species whose whole genome sequences are available confirmed that the novel species represented by strain UFMG‐CM‐Y285 is phylogenetically close to Sp. arborariae . The name Spathaspora marinasilvae sp. nov. is proposed to accommodate the novel species. The holotype of Sp. marinasilvae is CBS 13467 T (MycoBank 852799). The novel species was able to accumulate xylitol and produce ethanol from d ‐xylose, a trait of biotechnological interest common to several species of the genus Spathaspora .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.748
Threshold uncertainty score0.511

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.227
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it