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Record W4399708277 · doi:10.1101/2024.06.12.598661

Xenometabolome of Early-Life Stage Salmonids Exposed to 6PPD-Quinone

2024· preprint· en· W4399708277 on OpenAlexaff
Phillip Ankley, Francisco Carlos da Silva, Blake Hunnie, Catherine Roberts, Andreas N. M. Eriksson, Evan Kohlman, Jennifer Corker, Jodi Westcott, Bradlee Germain, Michael J. Martin, Justin Dubiel, Katherine Anderson-Bain, Rayen M. Urrutia, Natacha Hogan, John P. Giesy, Steve Wiseman, Ed S. Krol, Markus Hecker, Markus Brinkmann

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsGlobal Institute for Water SecurityUniversity of LethbridgeUniversity of Saskatchewan
Fundersnot available
KeywordsStage (stratigraphy)FisheryQuinoneEnvironmental scienceBiologyPaleontologyBiochemistry

Abstract

fetched live from OpenAlex

Abstract N -(1,3-Dimethylbutyl)- N′ -phenyl- p -phenylenediamine-quinone (6PPD-Q) is a ubiquitous transformation product (TP) derived from the rubber tire antioxidant N -(1,3-Dimethylbutyl)- N′ -phenyl- p -phenylenediamine (6PPD) and is acutely toxic to certain species of Salmonidae . Not all salmonids are sensitive to acute lethality caused by 6PPD-Q, with 6PPD-Q potency varying by several orders of magnitude among teleosts. The main driver(s) of species sensitivity differences is (are) a pressing question, with one area of interest examining whether differences in teleosts ability to biotransform and detoxify 6PPD-Q could be a key factor. This study utilized liquid-chromatography high-resolution mass spectrometry (LC-HRMS) to assess biotransformation and metabolome-wide effects of 6PPD-Q on early-life stage salmonids, including two sensitive species, rainbow trout ( Oncorhynchus mykiss ) and lake trout ( Salvelinus namaycush ), and one tolerant species, brown trout ( Salmo trutta ). Three phase I TPs and seven phase II TPs were detected, with differences in peak areas revealing that brown trout had the greatest ability to detoxify 6PPD-Q. Monohydroxylated TPs were verified using co-developed analytical standards that will be of use for future biomonitoring and exposure assessment. Several endogenous metabolites were found to be dysregulated in rainbow and lake trout, indicative of mitochondrial dysfunction, altered metabolism, and disrupted membrane permeability. Results of this study indicate a difference in the biotransformation capability of 6PPD-Q among Salmonidae fish species and subsequent unique metabolome responses. Graphical Abstract Synopsis Inter-species salmonid differences in the biotransformation capability of 6PPD-Q leads to sensitivity variability and subsequent unique metabolome responses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.235
Teacher spread0.219 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2024
Admission routes1
Has abstractyes

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