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Record W4399760063 · doi:10.26434/chemrxiv-2024-q17mn

Machine Learning Enables a Top-Down Approach to Mechanistic Elucidation

2024· preprint· en· W4399760063 on OpenAlexafffund
Isaiah O. Betinol, Yutao Kuang, Junshan Lai, Christopher Yousofi, Jolene P. Reid

Bibliographic record

VenueChemRxiv · 2024
Typepreprint
Languageen
FieldComputer Science
TopicMachine Learning and Data Classification
Canadian institutionsUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of CanadaUniversity of British ColumbiaCanada Foundation for Innovation
KeywordsTop-down and bottom-up designComputer scienceMechanism (biology)Data scienceArtificial intelligenceMachine learningCognitive scienceComputational biologyBiologyPsychologySoftware engineeringEpistemologyPhilosophy

Abstract

fetched live from OpenAlex

General reaction behavior is rarely reported in asymmetric catalysis, not simply because it is difficult to achieve, but also due to the methods used for its identification and study. Traditional approaches involve compartmentalization, where the impact of individual components is first analyzed, followed by assimilation using simple response and structure matching techniques. However, extending this method to accommodate complex conditions and diverse reactions proves challenging. Here, we present a data-driven method that relies on clusterwise linear regression to derive and predictively apply general mechanistic models of enantioinduction, with minimal human intervention. When applied to the palladium-catalyzed decarboxylative asymmetric allylic alkylation (DAAA) reaction, unexpected interactions governing enantioselectivity are revealed, supported by high-level computations and additional experiments. Our results demonstrate this workflow as a powerful new tool for automating mechanistic elucidation and effectively identifying general reaction performance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.003
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.006
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0020.001
Science and technology studies0.0010.001
Scholarly communication0.0020.001
Open science0.0020.002
Research integrity0.0010.004
Insufficient payload (model declined to judge)0.0030.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.261
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes2
Has abstractyes

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