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Record W4401116041 · doi:10.1007/s13225-024-00534-x

Taxonomic revision of Marasmius Fr. and Marasmiaceae Roze ex Kühner based on multigene phylogenetics and morphological evidence

2024· article· en· W4401116041 on OpenAlexafffund
Jadson José Souza de Oliveira, Dennis E. Desjardin, Thomas S. Jenkinson, Simona Margaritescu, Marina Capelari, Jean‐Marc Moncalvo

Bibliographic record

VenueFungal Diversity · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant and Fungal Species Descriptions
Canadian institutionsUniversity of TorontoRoyal Ontario Museum
FundersNatural Sciences and Engineering Research Council of CanadaConselho Nacional de Desenvolvimento Científico e TecnológicoCoordenação de Aperfeiçoamento de Pessoal de Nível SuperiorFundação de Amparo à Pesquisa do Estado de São PauloFundação de Amparo à Pesquisa do Estado do AmazonasNational Science Foundation
KeywordsSubgenusBiologySectBotanyPhylogenetic treeCladeTaxonomy (biology)Evolutionary biologyGeneticsGene

Abstract

fetched live from OpenAlex

Many taxonomic and systematic rearrangements were proposed to Marasmius Fr. since its original concept in 1835, and since 1980 when it became the type of Marasmiaceae. These were based on morphological and/or more recently molecular phylogenetic studies. This study conducted a comprehensive taxonomic and systematic evaluation of Marasmius that benefits the whole family, implementing multilocus (SSU, LSU, ITS, rpb2 and ef1-α ) phylogenetic analyses integrated with morphological and other features. The resulting trees support (1) a Marasmiaceae clade-based circumscription within Marasmiineae, (2) a Marasmius clade-based circumscription within Marasmiaceae, and (3) a subgenus-section-subsection-series system. Two subgenera are proposed: Globulares and Marasmius . Marasmius auton. subgen. includes Crinis-eques sect. nov., sect. Marasmius , Sanguirotales sect. nov., Variabilispori sect. nov., and Sicciformes sect. nov., while Globulares subg. nov. groups sect. Globulares and sect. Sicci . Four subsections are proposed in sect. Globulares and three in sect. Marasmius and sect. Sicciformes . Seventeen series were defined in sect. Globulares and three in sect. Sicci . Selected traits were assessed for their phylogenetic signals within Marasmius , providing a robust framework for a natural system. Based on this analysis, Marasmiaceae includes Chaetocalathus , Crinipellis , Marasmius and Moniliophthora/Paramarasmius , and Campanellaceae fam. nov. includes Brunneocorticium , Campanella/Tetrapyrgos , Neocampanella , and Marasmiellus sect. Candidi . New species, names, combinations and epitypes are also proposed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.012

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0020.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.034
GPT teacher head0.239
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations13
Published2024
Admission routes2
Has abstractyes

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