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Record W4401171543 · doi:10.1101/2024.07.30.24311170

A Machine Learning-enabled SIR Model for Adaptive and Dynamic Forecasting of COVID-19

2024· preprint· en· W4401171543 on OpenAlexaboutno aff
Peter Mortensen, Katharina B. Lauer, Stefan Petrus Rautenbach, Marco Gallotta, Natasha Sharapova, Ioannis Takkides, Mathew Linley

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldMathematics
TopicCOVID-19 epidemiological studies
Canadian institutionsnot available
Fundersnot available
KeywordsMean absolute percentage errorCoronavirus disease 2019 (COVID-19)Time seriesPandemicComputer scienceEconometricsPublic health interventionsMachine learningMean absolute errorStatisticsArtificial intelligenceMean squared errorPublic healthArtificial neural networkMathematicsMedicineInfectious disease (medical specialty)Disease

Abstract

fetched live from OpenAlex

Abstract The COVID-19 pandemic has posed significant challenges to public health systems worldwide, necessitating accurate and adaptable forecasting models to manage and mitigate its impacts. This study presents a novel forecasting framework based on a Machine Learning-enabled Susceptible-Infected-Recovered (ML-SIR) model with time-varying parameters to predict COVID-19 dynamics across multiple geographies. The model incorporates emergent patterns from reported time-series data to estimate new hospitalisations, hospitalised patients, and new deaths. Our framework adapts to the evolving nature of the pandemic by dynamically adjusting the infection rate parameter over time and using a Fourier series to capture oscillating patterns in the data. This approach improves upon traditional SIR and forecasting models, which often fail to account for the complex and shifting dynamics of COVID-19 due to new variants, changing public health interventions, and varying levels of immunity. Validation of the model was conducted using historical data from the United States, Italy, the United Kingdom, Canada, and Japan. The model’s performance was evaluated based on the Mean Absolute Percentage Error (MAPE) and Absolute Percentage Error of Cumulative values (CAPE) for three-month forecast horizons. Results indicated that the model achieved an average MAPE of 32.5% for new hospitalisations, 34.4% for patients, and 34.8% for new deaths, for three-month forecasts. Notably, the model demonstrated superior accuracy compared to existing forecasting models with like-for-like disease metrics, countries and forecast horizons. The proposed ML-SIR model offers a robust and adaptable tool for forecasting COVID-19 dynamics, capable of adjusting to new time-series data and varying geographical contexts. This adaptability makes it suitable for localised hospital capacity planning, scenario modelling, and for application to other respiratory infectious diseases with similar transmission dynamics, such as influenza and RSV. By providing reliable forecasts, the model supports informed public health decision-making and resource allocation, enhancing preparedness and response efforts.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.022
Threshold uncertainty score0.043

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.322
GPT teacher head0.420
Teacher spread0.098 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

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