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Record W4401496017 · doi:10.5376/rgg.2024.15.0011

Phylogenetic Patterns and Classification of Oryza Species: A Molecular Perspective

2024· article· en· W4401496017 on OpenAlex
Xuanjun Fang

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueRice Genomics and Genetics · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicCephalopods and Marine Biology
Canadian institutionsnot available
Fundersnot available
KeywordsPhylogenetic treeEvolutionary biologyPerspective (graphical)BiologyPhylogeneticsOryzaPhylogenetic relationshipEcologyOryza sativaGeneticsComputer scienceArtificial intelligenceGene

Abstract

fetched live from OpenAlex

This study explores the phylogenetic patterns and classification of Oryza species from a molecular perspective, offering key findings and insights. Major studies have found that traditional morphological methods have been enhanced by molecular techniques, such as DNA markers and next-generation sequencing (NGS), refining our understanding of Oryza phylogenetics, independent domestication in Asia and Africa has led to distinct genetic differences. Molecular evidence identifies key domestication genes and genomic signatures, shedding light on evolutionary adaptations, and that the distribution and genetic diversity of Oryza species have been shaped by natural dispersal and human-mediated migration. This study provides a detailed understanding of the phylogenetic system of the Oryza genus, providing profound insights into the evolutionary history and genetic diversity of rice species. Leveraging molecular phylogenetic insights can enhance taxonomy, conservation, and breeding, contributing to sustainable global rice agriculture.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.959
Threshold uncertainty score0.143

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.226
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it