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Record W4401496108 · doi:10.5376/pgt.2024.15.0006

Glycosyltransferases and Xylan Biosynthesis in Poplar: Genetic Regulation and Implications for Wood Quality

2024· article· en· W4401496108 on OpenAlexvenueno aff
Yongquan Lu

Bibliographic record

VenuePlant Gene and Trait · 2024
Typearticle
Languageen
FieldEngineering
TopicBiofuel production and bioconversion
Canadian institutionsnot available
Fundersnot available
KeywordsXylanGlycosyltransferaseBiosynthesisBiochemistryQuality (philosophy)ChemistryEnzymeBotanyBiotechnologyBiologyComputational biology

Abstract

fetched live from OpenAlex

Glycosyltransferases play a crucial role in the biosynthesis of xylan, a major hemicellulose component in the secondary cell walls of dicot wood, including poplar. This systematic review explores the genetic regulation of glycosyltransferases and their implications for wood quality in Populus  species. Xylan biosynthesis involves multiple glycosyltransferase families, including GT8, GT43, and GT47, which are essential for the structural integrity and mechanical properties of wood. Down-regulation of GT8D  genes in Populus trichocarpa  results in reduced xylan content and mechanical strength, highlighting the importance of these genes in wood formation. Similarly, GT47C has been shown to be functionally conserved with Arabidopsis Fragile fiber8, playing a significant role in xylan synthesis during wood formation. The GT43 family in poplar, comprising members such as PtrGT43A, PtrGT43B, and PtrGT43C, is involved in the biosynthesis of xylan backbones, with distinct functional roles analogous to Arabidopsis IRX9 and IRX14. Additionally, GT8E and GT8F glycosyltransferases are implicated in glucuronoxylan biosynthesis, further emphasizing the diverse roles of glycosyltransferases in wood development. The molecular characterization of PoGT8D and PoGT43B supports their involvement in glucuronoxylan biosynthesis, with PoGT43B acting as a functional ortholog of IRX9. The presence of regular glycosidic motifs in xylan modulates its molecular flexibility and interactions with cellulose, contributing to the structural integrity of secondary cell walls This review underscores the critical roles of glycosyltransferases in xylan biosynthesis and their broader implications for wood quality, providing insights into the genetic regulation of these enzymes and their potential applications in improving wood properties for industrial uses.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.831
Threshold uncertainty score0.234

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.232
Teacher spread0.211 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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