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Record W4401598927 · doi:10.1016/j.jpi.2024.100394

Globalization of a telepathology network with artificial intelligence applications in Colombia: The GLORIA program study protocol

2024· article· en· W4401598927 on OpenAlexfundno aff
Andrés Mosquera‐Zamudio, Marcela Gomez-Suarez, John Jaime Sprockel Díaz, Julián C. Riaño-Moreno, Emiel A. M. Janssen, Liron Pantanowitz, Rafael Parra‐Medina

Bibliographic record

VenueJournal of Pathology Informatics · 2024
Typearticle
Languageen
FieldComputer Science
TopicAI in cancer detection
Canadian institutionsnot available
FundersFaculty of Medicine, Dalhousie UniversityUniversidad Cooperativa de ​Colo​mb​iaProgram for Nonferrous Metals Vacuum Metallurgy Innovation Team of Ministry of Science and TechnologyMinisterio de Ciencia, Tecnología e Innovación
KeywordsTelepathologyMedical diagnosisDigital pathologyPathologyProtocol (science)MedicineGovernment (linguistics)Breast cancerCancerMedical physicsComputer scienceHealth careTelemedicineAlternative medicineInternal medicine

Abstract

fetched live from OpenAlex

In Colombia, cancer is recognized as a high-cost pathology by the national government and the Colombian High-Cost Disease Fund. As of 2020, the situation is most critical for adult cancer patients, particularly those under public healthcare and residing in remote regions of the country. The highest lag time for a diagnosis was observed for cervical cancer (79.13 days), followed by prostate (77.30 days), and breast cancer (70.25 days). Timely and accurate histopathological reporting plays a vital role in the diagnosis of cancer. In recent years, digital pathology has been globally implemented as a technological tool in two main areas: telepathology (TP) and computational pathology. TP has been shown to improve rapid and timely diagnosis in anatomic pathology by facilitating interaction between general laboratories and specialized pathologists worldwide through information and telecommunication technologies. Computational pathology provides diagnostic and prognostic assistance based on histopathological patterns, molecular, and clinical information, aiding pathologists in making more accurate diagnoses. We present the study protocol of the GLORIA digital pathology network, a pioneering initiative, and national grant-approved program aiming to design and pilot a Colombian digital pathology transformation focused on TP and computational pathology, in response to the general needs of pathology laboratories for diagnosing complex malignant tumors. The study protocol describes the design of a TP network to expand oncopathology services across all Colombian regions. It also describes an artificial intelligence proposal for lung cancer, one of Colombia's most prevalent cancers, and a freely accessible national histopathological image database to facilitate image analysis studies. National Digital Pathology network including Whole Slide Imaging Telepathology System and database for Artificial Intelligence (AI) models. SDC: Satellite Digitization Center COE: Center of excellence. • The GLORIA program marks a significant milestone in Latin American Digital Pathology. • GLORIA integrates public and private healthcare systems to address pathologist shortage. • The performance evaluation will be through a novel qualitative and quantitative method study.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.021
metaresearch head score (Gemma)0.020
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Protocol · Consensus signal: Protocol
Teacher disagreement score0.049
Threshold uncertainty score0.163

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0210.020
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0040.002
Scholarly communication0.0040.002
Open science0.0020.003
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0490.008

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.338
Teacher spread0.317 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreProtocol

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations11
Published2024
Admission routes1
Has abstractyes

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